Gene annotation
Transcriptome id Sobic.006G125800.1
Synonym YBR159, Sb06g020600, ATKCR1, KCR1
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed
UniProt C5YAW2
Pfam PF00106
Panther DB PTHR24322 PTHR24322:SF591
NCBI CDD KOG1014; 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3
KEGG Orthology K10251; HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT1G67730 : beta-ketoacyl reductase 1
RAP-DB (Rice) LOC_Os04g40730.1 : oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed
MaizeGDB (Corn) Zm00025a021292 , Zm00025a031859
Brachypodium PNT68970 , PNT61320 , PNT68969
Barley HORVU2Hr1G083810.1 , HORVU2Hr1G083780.21 , HORVU2Hr1G083780.20 , HORVU2Hr1G083780.23 , HORVU2Hr1G083780.22
Wheat TraesCS2B02G361200 , TraesCS2A02G321300 , TraesCS2D02G342100 , TraesCS2D02G342200
Populus -


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cDNA sequences
Sobic.006G125800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G235700 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
2 Sobic.003G339600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
3 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
4 Sobic.002G382500 heavy metal-associated domain containing protein, expressed -
5 Sobic.001G221900 3-ketoacyl-CoA synthase precursor, putative, expressed K15397: 3-ketoacyl-CoA synthase
6 Sobic.004G283800 dehydration response related protein, putative, expressed -
7 Sobic.010G107200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
8 Sobic.002G419200 inactive receptor kinase At2g26730 precursor, putative, expressed -
9 Sobic.003G360700 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
10 Sobic.003G045700 pleiotropic drug resistance protein, putative, expressed -
11 Sobic.001G207600 white-brown complex homolog protein 11, putative, expressed -
12 Sobic.006G044200 glycosyl hydrolase, putative, expressed K01183: chitinase
13 Sobic.009G154100 expressed protein -
14 Sobic.006G032800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
15 Sobic.007G189400 BEE 1, putative, expressed -
16 Sobic.004G248100 endoglucanase, putative, expressed -
17 Sobic.002G142500 expressed protein -
18 Sobic.002G400600 Os7bglu26 - beta-mannosidase/glucosidase/exoglucanase, expressed K05350: beta-glucosidase
19 Sobic.009G037300 transferase family protein, putative, expressed -
20 Sobic.001G488400 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659850)@bHLH family protein, putative, expressed -


Gene co-expression network
sample Sobic006G125800 Sobic006G125800 Sobic009G235700 Sobic009G235700 Sobic006G125800--Sobic009G235700 Sobic003G339600 Sobic003G339600 Sobic006G125800--Sobic003G339600 Sobic010G020600 Sobic010G020600 Sobic006G125800--Sobic010G020600 Sobic002G382500 Sobic002G382500 Sobic006G125800--Sobic002G382500 Sobic001G221900 Sobic001G221900 Sobic006G125800--Sobic001G221900 Sobic004G283800 Sobic004G283800 Sobic006G125800--Sobic004G283800 Sobic010G107200 Sobic010G107200 Sobic006G125800--Sobic010G107200 Sobic002G419200 Sobic002G419200 Sobic006G125800--Sobic002G419200 Sobic003G360700 Sobic003G360700 Sobic006G125800--Sobic003G360700 Sobic009G235700--Sobic006G125800 Sobic009G235700--Sobic010G020600 Sobic009G235700--Sobic001G221900 Sobic004G248100 Sobic004G248100 Sobic009G235700--Sobic004G248100 Sobic009G235700--Sobic003G339600 Sobic001G522300 Sobic001G522300 Sobic009G235700--Sobic001G522300 Sobic007G165800 Sobic007G165800 Sobic009G235700--Sobic007G165800 Sobic009G235700--Sobic004G283800 Sobic009G235700--Sobic003G360700 Sobic003G339600--Sobic010G020600 Sobic003G300400 Sobic003G300400 Sobic003G339600--Sobic003G300400 Sobic009G254500 Sobic009G254500 Sobic003G339600--Sobic009G254500 Sobic003G339600--Sobic004G248100 Sobic002G229700 Sobic002G229700 Sobic003G339600--Sobic002G229700 Sobic003G339600--Sobic004G283800 Sobic003G309400 Sobic003G309400 Sobic003G339600--Sobic003G309400 Sobic003G339600--Sobic002G382500 Sobic007G189400 Sobic007G189400 Sobic003G339600--Sobic007G189400 Sobic004G317200 Sobic004G317200 Sobic010G020600--Sobic004G317200 Sobic010G020600--Sobic004G248100 Sobic010G020600--Sobic003G339600 Sobic003G070600 Sobic003G070600 Sobic010G020600--Sobic003G070600 Sobic010G020600--Sobic009G235700 Sobic007G160300 Sobic007G160300 Sobic010G020600--Sobic007G160300 Sobic003G018700 Sobic003G018700 Sobic010G020600--Sobic003G018700 Sobic008G097700 Sobic008G097700 Sobic010G020600--Sobic008G097700 Sobic010G020600--Sobic001G221900 Sobic010G027700 Sobic010G027700 Sobic002G382500--Sobic010G027700 Sobic002G068400 Sobic002G068400 Sobic002G382500--Sobic002G068400 Sobic008G035400 Sobic008G035400 Sobic002G382500--Sobic008G035400 Sobic002G382500--Sobic003G339600 Sobic006G044200 Sobic006G044200 Sobic002G382500--Sobic006G044200 Sobic001G488400 Sobic001G488400 Sobic002G382500--Sobic001G488400 Sobic006G219100 Sobic006G219100 Sobic002G382500--Sobic006G219100 Sobic009G037300 Sobic009G037300 Sobic002G382500--Sobic009G037300 Sobic002G023700 Sobic002G023700 Sobic002G382500--Sobic002G023700 Sobic001G221900--Sobic003G070600 Sobic001G221900--Sobic009G235700 Sobic001G221900--Sobic010G020600 Sobic010G078700 Sobic010G078700 Sobic001G221900--Sobic010G078700 Sobic001G221900--Sobic003G339600 Sobic001G199400 Sobic001G199400 Sobic001G221900--Sobic001G199400 Sobic001G221900--Sobic004G248100 Sobic001G074000 Sobic001G074000 Sobic001G221900--Sobic001G074000 Sobic003G113500 Sobic003G113500 Sobic001G221900--Sobic003G113500 Sobic001G207600 Sobic001G207600 Sobic004G283800--Sobic001G207600 Sobic004G274600 Sobic004G274600 Sobic004G283800--Sobic004G274600 Sobic004G283800--Sobic003G339600 Sobic004G283800--Sobic002G229700 Sobic004G283800--Sobic003G070600 Sobic004G283800--Sobic010G020600 Sobic004G283800--Sobic009G235700 Sobic004G357000 Sobic004G357000 Sobic004G283800--Sobic004G357000 Sobic004G283800--Sobic003G113500 Sobic005G209900 Sobic005G209900 Sobic010G107200--Sobic005G209900 Sobic005G196500 Sobic005G196500 Sobic010G107200--Sobic005G196500 Sobic006G233600 Sobic006G233600 Sobic010G107200--Sobic006G233600 Sobic009G154100 Sobic009G154100 Sobic010G107200--Sobic009G154100 Sobic006G032800 Sobic006G032800 Sobic010G107200--Sobic006G032800 Sobic007G142300 Sobic007G142300 Sobic010G107200--Sobic007G142300 Sobic001G389600 Sobic001G389600 Sobic010G107200--Sobic001G389600 Sobic001G478100 Sobic001G478100 Sobic010G107200--Sobic001G478100 Sobic005G147800 Sobic005G147800 Sobic010G107200--Sobic005G147800 Sobic002G419200--Sobic003G300400 Sobic003G338200 Sobic003G338200 Sobic002G419200--Sobic003G338200 Sobic003G116100 Sobic003G116100 Sobic002G419200--Sobic003G116100 Sobic002G419200--Sobic003G309400 Sobic003G277200 Sobic003G277200 Sobic002G419200--Sobic003G277200 Sobic001G285200 Sobic001G285200 Sobic002G419200--Sobic001G285200 Sobic002G032500 Sobic002G032500 Sobic002G419200--Sobic002G032500 Sobic002G419200--Sobic004G248100 Sobic002G419200--Sobic003G339600 Sobic003G360700--Sobic009G235700 Sobic003G360700--Sobic001G221900 Sobic009G172700 Sobic009G172700 Sobic003G360700--Sobic009G172700 Sobic003G360700--Sobic001G074000 Sobic003G360700--Sobic002G419200 Sobic003G360700--Sobic004G274600 Sobic003G360700--Sobic001G522300 Sobic003G360700--Sobic004G283800 Sobic003G360700--Sobic010G020600
Octagon: transcription factors


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