Gene annotation
Transcriptome id Sobic.006G044200.1
Synonym Sb06g011080
Functional annotation glycosyl hydrolase, putative, expressed
UniProt C5YE78
Pfam PF00704
Panther DB PTHR11177 PTHR11177:SF180
NCBI CDD KOG2806; Chitinase
KEGG Orthology K01183; chitinase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT4G19810 : Glycosyl hydrolase family protein with chitinase insertion domain
RAP-DB (Rice) LOC_Os04g30770.1 : glycosyl hydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a055856
Brachypodium -
Barley -
Wheat TraesCS2B02G296600 , TraesCS2A02G279100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G035400 stress responsive A/B Barrel domain containing protein, expressed -
2 Sobic.001G488400 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659850)@bHLH family protein, putative, expressed -
3 Sobic.005G188500 expressed protein -
4 Sobic.004G248100 endoglucanase, putative, expressed -
5 Sobic.006G032800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
6 Sobic.003G116100 pectinesterase, putative, expressed K01051: pectinesterase
7 Sobic.007G189400 BEE 1, putative, expressed -
8 Sobic.002G382500 heavy metal-associated domain containing protein, expressed -
9 Sobic.002G068400 - -
10 Sobic.003G339600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
11 Sobic.010G027700 OsSAUR24 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
12 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
13 Sobic.003G338200 receptor-like protein kinase precursor, putative, expressed -
14 Sobic.002G419200 inactive receptor kinase At2g26730 precursor, putative, expressed -
15 Sobic.007G094200 expressed protein -
16 Sobic.009G235700 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
17 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
18 Sobic.006G219100 expressed protein -
19 Sobic.001G119200 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.008G187400 - -


Gene co-expression network
sample Sobic006G044200 Sobic006G044200 Sobic008G035400 Sobic008G035400 Sobic006G044200--Sobic008G035400 Sobic001G488400 Sobic001G488400 Sobic006G044200--Sobic001G488400 Sobic005G188500 Sobic005G188500 Sobic006G044200--Sobic005G188500 Sobic004G248100 Sobic004G248100 Sobic006G044200--Sobic004G248100 Sobic006G032800 Sobic006G032800 Sobic006G044200--Sobic006G032800 Sobic003G116100 Sobic003G116100 Sobic006G044200--Sobic003G116100 Sobic007G189400 Sobic007G189400 Sobic006G044200--Sobic007G189400 Sobic002G382500 Sobic002G382500 Sobic006G044200--Sobic002G382500 Sobic002G068400 Sobic002G068400 Sobic006G044200--Sobic002G068400 Sobic008G035400--Sobic002G068400 Sobic008G035400--Sobic006G044200 Sobic010G027700 Sobic010G027700 Sobic008G035400--Sobic010G027700 Sobic008G035400--Sobic002G382500 Sobic001G179400 Sobic001G179400 Sobic008G035400--Sobic001G179400 Sobic008G035400--Sobic004G248100 Sobic004G215000 Sobic004G215000 Sobic008G035400--Sobic004G215000 Sobic008G035400--Sobic001G488400 Sobic010G077700 Sobic010G077700 Sobic008G035400--Sobic010G077700 Sobic001G488400--Sobic005G188500 Sobic001G488400--Sobic010G027700 Sobic001G488400--Sobic006G044200 Sobic008G187400 Sobic008G187400 Sobic001G488400--Sobic008G187400 Sobic001G438500 Sobic001G438500 Sobic001G488400--Sobic001G438500 Sobic001G488400--Sobic003G116100 Sobic001G488400--Sobic007G189400 Sobic001G488400--Sobic002G068400 Sobic001G488400--Sobic008G035400 Sobic005G188500--Sobic001G488400 Sobic005G188500--Sobic006G044200 Sobic005G188500--Sobic007G189400 Sobic005G188500--Sobic006G032800 Sobic007G012800 Sobic007G012800 Sobic005G188500--Sobic007G012800 Sobic005G188500--Sobic008G035400 Sobic010G065700 Sobic010G065700 Sobic005G188500--Sobic010G065700 Sobic005G209900 Sobic005G209900 Sobic005G188500--Sobic005G209900 Sobic010G107200 Sobic010G107200 Sobic005G188500--Sobic010G107200 Sobic002G032500 Sobic002G032500 Sobic004G248100--Sobic002G032500 Sobic003G113500 Sobic003G113500 Sobic004G248100--Sobic003G113500 Sobic010G020600 Sobic010G020600 Sobic004G248100--Sobic010G020600 Sobic004G357000 Sobic004G357000 Sobic004G248100--Sobic004G357000 Sobic003G309400 Sobic003G309400 Sobic004G248100--Sobic003G309400 Sobic003G338200 Sobic003G338200 Sobic004G248100--Sobic003G338200 Sobic003G339600 Sobic003G339600 Sobic004G248100--Sobic003G339600 Sobic004G248100--Sobic006G044200 Sobic007G094200 Sobic007G094200 Sobic004G248100--Sobic007G094200 Sobic006G032800--Sobic006G044200 Sobic006G032800--Sobic010G107200 Sobic006G032800--Sobic005G188500 Sobic006G233600 Sobic006G233600 Sobic006G032800--Sobic006G233600 Sobic003G018700 Sobic003G018700 Sobic006G032800--Sobic003G018700 Sobic009G154100 Sobic009G154100 Sobic006G032800--Sobic009G154100 Sobic001G389600 Sobic001G389600 Sobic006G032800--Sobic001G389600 Sobic001G478100 Sobic001G478100 Sobic006G032800--Sobic001G478100 Sobic006G032800--Sobic007G012800 Sobic002G419200 Sobic002G419200 Sobic003G116100--Sobic002G419200 Sobic003G116100--Sobic007G094200 Sobic003G116100--Sobic003G338200 Sobic006G219100 Sobic006G219100 Sobic003G116100--Sobic006G219100 Sobic003G116100--Sobic006G044200 Sobic003G116100--Sobic001G488400 Sobic003G277200 Sobic003G277200 Sobic003G116100--Sobic003G277200 Sobic003G300400 Sobic003G300400 Sobic003G116100--Sobic003G300400 Sobic003G116100--Sobic008G187400 Sobic002G072700 Sobic002G072700 Sobic007G189400--Sobic002G072700 Sobic007G189400--Sobic005G188500 Sobic009G254500 Sobic009G254500 Sobic007G189400--Sobic009G254500 Sobic007G189400--Sobic003G339600 Sobic007G189400--Sobic001G488400 Sobic007G189400--Sobic010G020600 Sobic007G189400--Sobic006G044200 Sobic001G119200 Sobic001G119200 Sobic007G189400--Sobic001G119200 Sobic002G139800 Sobic002G139800 Sobic007G189400--Sobic002G139800 Sobic002G382500--Sobic010G027700 Sobic002G382500--Sobic002G068400 Sobic002G382500--Sobic008G035400 Sobic002G382500--Sobic003G339600 Sobic002G382500--Sobic006G044200 Sobic002G382500--Sobic001G488400 Sobic002G382500--Sobic006G219100 Sobic009G037300 Sobic009G037300 Sobic002G382500--Sobic009G037300 Sobic002G023700 Sobic002G023700 Sobic002G382500--Sobic002G023700 Sobic002G068400--Sobic010G027700 Sobic002G068400--Sobic008G035400 Sobic002G068400--Sobic001G179400 Sobic002G068400--Sobic004G215000 Sobic004G342000 Sobic004G342000 Sobic002G068400--Sobic004G342000 Sobic002G068400--Sobic010G077700 Sobic002G068400--Sobic002G382500 Sobic002G068400--Sobic007G094200 Sobic004G045500 Sobic004G045500 Sobic002G068400--Sobic004G045500
Octagon: transcription factors


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