Gene annotation
Transcriptome id Sobic.003G116100.1
Synonym Sb03g009790
Functional annotation pectinesterase, putative, expressed
UniProt C5XFU3
Pfam PF04043 PF01095
Panther DB PTHR31707 PTHR31707:SF34
NCBI CDD -
KEGG Orthology K01051; pectinesterase
Gene Ontology GO:0004857; enzyme inhibitor activity GO:0005618cell wall


Orthologs (automatic annotation)
TAIR AT3G05620 : Plant invertase/pectin methylesterase inhibitor superfamily
RAP-DB (Rice) LOC_Os01g15039.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a049134 , Zm00025a026574 , Zm00025a030727 , Zm00025a035335
Brachypodium KQK10881 , KQK03643 , KQK04130 , KQJ98516
Barley HORVU3Hr1G091360.6 , HORVU3Hr1G091360.7 , HORVU3Hr1G091360.4 , HORVU3Hr1G091360.2 , HORVU3Hr1G091360.3 , HORVU3Hr1G091360.1 , HORVU6Hr1G084030.4 , HORVU6Hr1G084030.1 , HORVU6Hr1G084030.3 , HORVU6Hr1G084030.2 , HORVU3Hr1G035210.4 , HORVU3Hr1G035210.1 , HORVU3Hr1G035210.2 , HORVU3Hr1G035210.3
Wheat TraesCS3B02G204500 , TraesCS3A02G174100 , TraesCS3D02G180200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G419200 inactive receptor kinase At2g26730 precursor, putative, expressed -
2 Sobic.007G094200 expressed protein -
3 Sobic.003G338200 receptor-like protein kinase precursor, putative, expressed -
4 Sobic.006G219100 expressed protein -
5 Sobic.006G044200 glycosyl hydrolase, putative, expressed K01183: chitinase
6 Sobic.001G488400 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659850)@bHLH family protein, putative, expressed -
7 Sobic.003G277200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
8 Sobic.003G300400 expressed protein -
9 Sobic.008G187400 - -
10 Sobic.002G032500 leucine-rich repeat family protein, putative, expressed -
11 Sobic.001G345200 OsFBX94 - F-box domain containing protein, expressed -
12 Sobic.004G248100 endoglucanase, putative, expressed -
13 Sobic.008G035400 stress responsive A/B Barrel domain containing protein, expressed -
14 Sobic.008G154700 expressed protein -
15 Sobic.010G027700 OsSAUR24 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
16 Sobic.003G309400 OsSub4 - Putative Subtilisin homologue, expressed -
17 Sobic.002G382500 heavy metal-associated domain containing protein, expressed -
18 Sobic.003G339600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
19 Sobic.010G216600 expressed protein -
20 Sobic.002G068400 - -


Gene co-expression network
sample Sobic003G116100 Sobic003G116100 Sobic002G419200 Sobic002G419200 Sobic003G116100--Sobic002G419200 Sobic007G094200 Sobic007G094200 Sobic003G116100--Sobic007G094200 Sobic003G338200 Sobic003G338200 Sobic003G116100--Sobic003G338200 Sobic006G219100 Sobic006G219100 Sobic003G116100--Sobic006G219100 Sobic006G044200 Sobic006G044200 Sobic003G116100--Sobic006G044200 Sobic001G488400 Sobic001G488400 Sobic003G116100--Sobic001G488400 Sobic003G277200 Sobic003G277200 Sobic003G116100--Sobic003G277200 Sobic003G300400 Sobic003G300400 Sobic003G116100--Sobic003G300400 Sobic008G187400 Sobic008G187400 Sobic003G116100--Sobic008G187400 Sobic002G419200--Sobic003G300400 Sobic002G419200--Sobic003G338200 Sobic002G419200--Sobic003G116100 Sobic003G309400 Sobic003G309400 Sobic002G419200--Sobic003G309400 Sobic002G419200--Sobic003G277200 Sobic001G285200 Sobic001G285200 Sobic002G419200--Sobic001G285200 Sobic002G032500 Sobic002G032500 Sobic002G419200--Sobic002G032500 Sobic004G248100 Sobic004G248100 Sobic002G419200--Sobic004G248100 Sobic003G339600 Sobic003G339600 Sobic002G419200--Sobic003G339600 Sobic007G094200--Sobic002G032500 Sobic002G416400 Sobic002G416400 Sobic007G094200--Sobic002G416400 Sobic008G154700 Sobic008G154700 Sobic007G094200--Sobic008G154700 Sobic003G178500 Sobic003G178500 Sobic007G094200--Sobic003G178500 Sobic004G342000 Sobic004G342000 Sobic007G094200--Sobic004G342000 Sobic010G027700 Sobic010G027700 Sobic007G094200--Sobic010G027700 Sobic001G438500 Sobic001G438500 Sobic007G094200--Sobic001G438500 Sobic004G227900 Sobic004G227900 Sobic007G094200--Sobic004G227900 Sobic007G094200--Sobic006G219100 Sobic003G338200--Sobic002G032500 Sobic003G338200--Sobic002G419200 Sobic003G338200--Sobic003G309400 Sobic003G338200--Sobic004G248100 Sobic001G345200 Sobic001G345200 Sobic003G338200--Sobic001G345200 Sobic003G338200--Sobic003G116100 Sobic003G338200--Sobic007G094200 Sobic003G338200--Sobic003G277200 Sobic003G338200--Sobic003G300400 Sobic006G219100--Sobic007G094200 Sobic004G215000 Sobic004G215000 Sobic006G219100--Sobic004G215000 Sobic001G179400 Sobic001G179400 Sobic006G219100--Sobic001G179400 Sobic006G219100--Sobic004G227900 Sobic006G219100--Sobic008G154700 Sobic006G219100--Sobic003G116100 Sobic006G219100--Sobic010G027700 Sobic002G068400 Sobic002G068400 Sobic006G219100--Sobic002G068400 Sobic006G219100--Sobic004G342000 Sobic008G035400 Sobic008G035400 Sobic006G044200--Sobic008G035400 Sobic006G044200--Sobic001G488400 Sobic005G188500 Sobic005G188500 Sobic006G044200--Sobic005G188500 Sobic006G044200--Sobic004G248100 Sobic006G032800 Sobic006G032800 Sobic006G044200--Sobic006G032800 Sobic006G044200--Sobic003G116100 Sobic007G189400 Sobic007G189400 Sobic006G044200--Sobic007G189400 Sobic002G382500 Sobic002G382500 Sobic006G044200--Sobic002G382500 Sobic006G044200--Sobic002G068400 Sobic001G488400--Sobic005G188500 Sobic001G488400--Sobic010G027700 Sobic001G488400--Sobic006G044200 Sobic001G488400--Sobic008G187400 Sobic001G488400--Sobic001G438500 Sobic001G488400--Sobic003G116100 Sobic001G488400--Sobic007G189400 Sobic001G488400--Sobic002G068400 Sobic001G488400--Sobic008G035400 Sobic003G277200--Sobic002G419200 Sobic003G277200--Sobic003G338200 Sobic003G277200--Sobic003G116100 Sobic008G039800 Sobic008G039800 Sobic003G277200--Sobic008G039800 Sobic010G216600 Sobic010G216600 Sobic003G277200--Sobic010G216600 Sobic003G277200--Sobic001G345200 Sobic003G277200--Sobic001G285200 Sobic007G012800 Sobic007G012800 Sobic003G277200--Sobic007G012800 Sobic001G037400 Sobic001G037400 Sobic003G277200--Sobic001G037400 Sobic003G300400--Sobic003G309400 Sobic003G300400--Sobic002G032500 Sobic003G300400--Sobic002G419200 Sobic009G254500 Sobic009G254500 Sobic003G300400--Sobic009G254500 Sobic003G300400--Sobic007G094200 Sobic003G300400--Sobic003G339600 Sobic002G229700 Sobic002G229700 Sobic003G300400--Sobic002G229700 Sobic003G300400--Sobic008G154700 Sobic009G141300 Sobic009G141300 Sobic003G300400--Sobic009G141300 Sobic008G187400--Sobic007G094200 Sobic008G187400--Sobic001G438500 Sobic008G187400--Sobic009G254500 Sobic008G187400--Sobic001G488400 Sobic002G011000 Sobic002G011000 Sobic008G187400--Sobic002G011000 Sobic005G231400 Sobic005G231400 Sobic008G187400--Sobic005G231400 Sobic008G187400--Sobic003G300400 Sobic008G187400--Sobic002G032500 Sobic008G187400--Sobic003G309400
Octagon: transcription factors


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