Gene annotation
Transcriptome id Sobic.001G221900.1
Synonym Sb01g019520, KCS12
Functional annotation 3-ketoacyl-CoA synthase precursor, putative, expressed
UniProt C5WYI0
Pfam PF08541 PF08392
Panther DB PTHR31561 PTHR31561:SF11
NCBI CDD -
KEGG Orthology K15397; 3-ketoacyl-CoA synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process GO:0016020membrane GO:0006633fatty acid biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G28630 : 3-ketoacyl-CoA synthase 12
RAP-DB (Rice) LOC_Os10g33370.1 : 3-ketoacyl-CoA synthase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a052078 , Zm00025a006643 , Zm00025a053041 , Zm00025a044659 , Zm00025a001341
Brachypodium KQJ97060
Barley HORVU1Hr1G040420.4 , HORVU1Hr1G040420.1 , HORVU1Hr1G040420.3 , HORVU1Hr1G040420.2
Wheat TraesCS1A02G152100 , TraesCS1D02G148900 , TraesCS1B02G169500 , TraesCS5B02G187900
Populus -


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cDNA sequences
Sobic.001G221900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G070600 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed -
2 Sobic.009G235700 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
3 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
4 Sobic.010G078700 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
5 Sobic.003G339600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
6 Sobic.001G199400 monocopper oxidase, putative, expressed -
7 Sobic.004G248100 endoglucanase, putative, expressed -
8 Sobic.001G074000 receptor protein kinase CLAVATA1 precursor, putative, expressed -
9 Sobic.003G113500 MFS18 protein precursor, putative, expressed -
10 Sobic.001G434100 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
11 Sobic.004G274600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
12 Sobic.003G360700 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
13 Sobic.006G125800 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
14 Sobic.002G072700 carboxyl-terminal peptidase, putative, expressed -
15 Sobic.007G165800 SLG(Ortholog in rice:Feng et al. (2016))(PubMedID : 31659908)@transferase family protein, putative, expressed -
16 Sobic.004G045500 phytosulfokine receptor precursor, putative, expressed -
17 Sobic.009G154100 expressed protein -
18 Sobic.001G470200 membrane associated DUF588 domain containing protein, putative, expressed -
19 Sobic.007G189400 BEE 1, putative, expressed -
20 Sobic.001G228100 gene responsible for epi-cuticular wax accumulation in sorghum.(PubMedID : 29379518)@GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic001G221900 Sobic001G221900 Sobic003G070600 Sobic003G070600 Sobic001G221900--Sobic003G070600 Sobic009G235700 Sobic009G235700 Sobic001G221900--Sobic009G235700 Sobic010G020600 Sobic010G020600 Sobic001G221900--Sobic010G020600 Sobic010G078700 Sobic010G078700 Sobic001G221900--Sobic010G078700 Sobic003G339600 Sobic003G339600 Sobic001G221900--Sobic003G339600 Sobic001G199400 Sobic001G199400 Sobic001G221900--Sobic001G199400 Sobic004G248100 Sobic004G248100 Sobic001G221900--Sobic004G248100 Sobic001G074000 Sobic001G074000 Sobic001G221900--Sobic001G074000 Sobic003G113500 Sobic003G113500 Sobic001G221900--Sobic003G113500 Sobic003G070600--Sobic001G074000 Sobic003G070600--Sobic010G020600 Sobic007G160300 Sobic007G160300 Sobic003G070600--Sobic007G160300 Sobic003G070600--Sobic001G199400 Sobic003G070600--Sobic003G113500 Sobic003G070600--Sobic001G221900 Sobic004G274600 Sobic004G274600 Sobic003G070600--Sobic004G274600 Sobic004G283800 Sobic004G283800 Sobic003G070600--Sobic004G283800 Sobic003G070600--Sobic004G248100 Sobic006G125800 Sobic006G125800 Sobic009G235700--Sobic006G125800 Sobic009G235700--Sobic010G020600 Sobic009G235700--Sobic001G221900 Sobic009G235700--Sobic004G248100 Sobic009G235700--Sobic003G339600 Sobic001G522300 Sobic001G522300 Sobic009G235700--Sobic001G522300 Sobic007G165800 Sobic007G165800 Sobic009G235700--Sobic007G165800 Sobic009G235700--Sobic004G283800 Sobic003G360700 Sobic003G360700 Sobic009G235700--Sobic003G360700 Sobic004G317200 Sobic004G317200 Sobic010G020600--Sobic004G317200 Sobic010G020600--Sobic004G248100 Sobic010G020600--Sobic003G339600 Sobic010G020600--Sobic003G070600 Sobic010G020600--Sobic009G235700 Sobic010G020600--Sobic007G160300 Sobic003G018700 Sobic003G018700 Sobic010G020600--Sobic003G018700 Sobic008G097700 Sobic008G097700 Sobic010G020600--Sobic008G097700 Sobic010G020600--Sobic001G221900 Sobic010G078700--Sobic003G113500 Sobic010G078700--Sobic001G199400 Sobic010G078700--Sobic007G165800 Sobic006G058000 Sobic006G058000 Sobic010G078700--Sobic006G058000 Sobic010G078700--Sobic010G020600 Sobic010G078700--Sobic001G221900 Sobic010G078700--Sobic004G248100 Sobic010G078700--Sobic004G274600 Sobic001G470200 Sobic001G470200 Sobic010G078700--Sobic001G470200 Sobic003G339600--Sobic010G020600 Sobic003G300400 Sobic003G300400 Sobic003G339600--Sobic003G300400 Sobic009G254500 Sobic009G254500 Sobic003G339600--Sobic009G254500 Sobic003G339600--Sobic004G248100 Sobic002G229700 Sobic002G229700 Sobic003G339600--Sobic002G229700 Sobic003G339600--Sobic004G283800 Sobic003G309400 Sobic003G309400 Sobic003G339600--Sobic003G309400 Sobic002G382500 Sobic002G382500 Sobic003G339600--Sobic002G382500 Sobic007G189400 Sobic007G189400 Sobic003G339600--Sobic007G189400 Sobic010G014700 Sobic010G014700 Sobic001G199400--Sobic010G014700 Sobic001G199400--Sobic003G113500 Sobic003G027100 Sobic003G027100 Sobic001G199400--Sobic003G027100 Sobic003G338700 Sobic003G338700 Sobic001G199400--Sobic003G338700 Sobic001G199400--Sobic007G165800 Sobic001G199400--Sobic010G078700 Sobic001G199400--Sobic003G070600 Sobic007G180200 Sobic007G180200 Sobic001G199400--Sobic007G180200 Sobic001G199400--Sobic001G074000 Sobic002G032500 Sobic002G032500 Sobic004G248100--Sobic002G032500 Sobic004G248100--Sobic003G113500 Sobic004G248100--Sobic010G020600 Sobic004G357000 Sobic004G357000 Sobic004G248100--Sobic004G357000 Sobic004G248100--Sobic003G309400 Sobic003G338200 Sobic003G338200 Sobic004G248100--Sobic003G338200 Sobic004G248100--Sobic003G339600 Sobic006G044200 Sobic006G044200 Sobic004G248100--Sobic006G044200 Sobic007G094200 Sobic007G094200 Sobic004G248100--Sobic007G094200 Sobic001G074000--Sobic001G522300 Sobic001G074000--Sobic003G070600 Sobic009G129700 Sobic009G129700 Sobic001G074000--Sobic009G129700 Sobic001G074000--Sobic007G160300 Sobic001G074000--Sobic001G199400 Sobic001G493900 Sobic001G493900 Sobic001G074000--Sobic001G493900 Sobic003G019900 Sobic003G019900 Sobic001G074000--Sobic003G019900 Sobic001G074000--Sobic010G014700 Sobic001G074000--Sobic010G020600 Sobic003G113500--Sobic001G199400 Sobic003G113500--Sobic004G357000 Sobic003G113500--Sobic004G248100 Sobic004G211700 Sobic004G211700 Sobic003G113500--Sobic004G211700 Sobic003G113500--Sobic003G027100 Sobic003G113500--Sobic010G078700 Sobic003G113500--Sobic003G070600 Sobic004G342000 Sobic004G342000 Sobic003G113500--Sobic004G342000 Sobic003G113500--Sobic002G032500
Octagon: transcription factors


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