Gene annotation
Transcriptome id Sobic.010G078700.1
Synonym Sb10g006820, ATHDG11, EDT1, HDG11
Functional annotation homeobox and START domains containing protein, putative, expressed
UniProt C5Z6D6
Pfam PF00046 PF01852
Panther DB PTHR24326 PTHR24326:SF236
NCBI CDD KOG0490; Transcription factor, contains HOX domain
KEGG Orthology K09338; homeobox-leucine zipper protein
Gene Ontology GO:0003677; DNA binding GO:0008289lipid binding


Orthologs (automatic annotation)
TAIR AT1G73360 : homeodomain GLABROUS 11
RAP-DB (Rice) LOC_Os06g10600.1 : homeobox and START domains containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a054779 , Zm00025a057079 , Zm00025a033058 , Zm00025a047725 , Zm00025a049609 , Zm00025a029982 , Zm00025a022274 , Zm00025a023723 , Zm00025a055280 , Zm00025a042486
Brachypodium PNT69551 , KQJ91131 , KQK01691 , KQK19067
Barley HORVU6Hr1G079410.22 , HORVU6Hr1G079410.20 , HORVU6Hr1G079410.21 , HORVU6Hr1G079410.19 , HORVU6Hr1G079410.9 , HORVU6Hr1G079410.8 , HORVU6Hr1G079410.3 , HORVU6Hr1G079410.2 , HORVU6Hr1G079410.1 , HORVU6Hr1G079410.7 , HORVU6Hr1G079410.6 , HORVU6Hr1G079410.5 , HORVU6Hr1G079410.4 , HORVU6Hr1G079410.17 , HORVU7Hr1G035230.14 , HORVU7Hr1G035230.15 , HORVU7Hr1G035230.10 , HORVU7Hr1G035230.11 , HORVU7Hr1G035230.12 , HORVU7Hr1G035230.13 , HORVU6Hr1G079410.13 , HORVU6Hr1G079410.12 , HORVU6Hr1G079410.11 , HORVU6Hr1G079410.10 , HORVU6Hr1G079410.16 , HORVU6Hr1G079410.15 , HORVU6Hr1G079410.14 , HORVU2Hr1G095210.7 , HORVU2Hr1G095210.6 , HORVU2Hr1G095210.5 , HORVU2Hr1G095210.4 , HORVU2Hr1G095210.3 , HORVU2Hr1G095210.2 , HORVU2Hr1G095210.1 , HORVU2Hr1G095210.8 , HORVU6Hr1G079410.18 , HORVU7Hr1G035230.8 , HORVU7Hr1G035230.9 , HORVU7Hr1G035230.6 , HORVU7Hr1G035230.7 , HORVU7Hr1G035230.2 , HORVU7Hr1G035230.3 , HORVU7Hr1G035230.1 , HORVU7Hr1G025440.3
Wheat TraesCS2B02G419200 , TraesCS2B02G419200 , TraesCS7B02G072700 , TraesCS7A02G167900 , TraesCS7D02G168700 , TraesCS6D02G237000 , TraesCS2D02G398600 , TraesCS6B02G269700 , TraesCS6D02G304300 , TraesCS7D02G305200 , TraesCS6B02G354900 , TraesCS5D02G320600 , TraesCS6B02G354900 , TraesCS6B02G354900 , TraesCS6A02G255800 , TraesCS6A02G324500 , TraesCS7D02G305200 , TraesCS7B02G208600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G113500 MFS18 protein precursor, putative, expressed -
2 Sobic.001G199400 monocopper oxidase, putative, expressed -
3 Sobic.007G165800 SLG(Ortholog in rice:Feng et al. (2016))(PubMedID : 31659908)@transferase family protein, putative, expressed -
4 Sobic.006G058000 OsSCP24 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
5 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
6 Sobic.001G221900 3-ketoacyl-CoA synthase precursor, putative, expressed K15397: 3-ketoacyl-CoA synthase
7 Sobic.004G248100 endoglucanase, putative, expressed -
8 Sobic.004G274600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
9 Sobic.001G470200 membrane associated DUF588 domain containing protein, putative, expressed -
10 Sobic.003G339600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
11 Sobic.004G211700 - -
12 Sobic.001G434100 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
13 Sobic.003G027100 keratin, type I cytoskeletal 9, putative, expressed -
14 Sobic.009G235700 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
15 Sobic.003G239600 chloroplast unusual positioning protein, putative, expressed -
16 Sobic.003G070600 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed -
17 Sobic.003G309400 OsSub4 - Putative Subtilisin homologue, expressed -
18 Sobic.004G357000 inactive receptor kinase At2g26730 precursor, putative, expressed -
19 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
20 Sobic.009G141300 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic010G078700 Sobic010G078700 Sobic003G113500 Sobic003G113500 Sobic010G078700--Sobic003G113500 Sobic001G199400 Sobic001G199400 Sobic010G078700--Sobic001G199400 Sobic007G165800 Sobic007G165800 Sobic010G078700--Sobic007G165800 Sobic006G058000 Sobic006G058000 Sobic010G078700--Sobic006G058000 Sobic010G020600 Sobic010G020600 Sobic010G078700--Sobic010G020600 Sobic001G221900 Sobic001G221900 Sobic010G078700--Sobic001G221900 Sobic004G248100 Sobic004G248100 Sobic010G078700--Sobic004G248100 Sobic004G274600 Sobic004G274600 Sobic010G078700--Sobic004G274600 Sobic001G470200 Sobic001G470200 Sobic010G078700--Sobic001G470200 Sobic003G113500--Sobic001G199400 Sobic004G357000 Sobic004G357000 Sobic003G113500--Sobic004G357000 Sobic003G113500--Sobic004G248100 Sobic004G211700 Sobic004G211700 Sobic003G113500--Sobic004G211700 Sobic003G027100 Sobic003G027100 Sobic003G113500--Sobic003G027100 Sobic003G113500--Sobic010G078700 Sobic003G070600 Sobic003G070600 Sobic003G113500--Sobic003G070600 Sobic004G342000 Sobic004G342000 Sobic003G113500--Sobic004G342000 Sobic002G032500 Sobic002G032500 Sobic003G113500--Sobic002G032500 Sobic010G014700 Sobic010G014700 Sobic001G199400--Sobic010G014700 Sobic001G199400--Sobic003G113500 Sobic001G199400--Sobic003G027100 Sobic003G338700 Sobic003G338700 Sobic001G199400--Sobic003G338700 Sobic001G199400--Sobic007G165800 Sobic001G199400--Sobic010G078700 Sobic001G199400--Sobic003G070600 Sobic007G180200 Sobic007G180200 Sobic001G199400--Sobic007G180200 Sobic001G074000 Sobic001G074000 Sobic001G199400--Sobic001G074000 Sobic007G165800--Sobic004G274600 Sobic001G434100 Sobic001G434100 Sobic007G165800--Sobic001G434100 Sobic007G165800--Sobic007G180200 Sobic001G286700 Sobic001G286700 Sobic007G165800--Sobic001G286700 Sobic007G165800--Sobic003G027100 Sobic010G235300 Sobic010G235300 Sobic007G165800--Sobic010G235300 Sobic007G165800--Sobic001G199400 Sobic007G170100 Sobic007G170100 Sobic007G165800--Sobic007G170100 Sobic007G165800--Sobic003G338700 Sobic007G160300 Sobic007G160300 Sobic006G058000--Sobic007G160300 Sobic006G058000--Sobic010G020600 Sobic006G058000--Sobic010G078700 Sobic010G192500 Sobic010G192500 Sobic006G058000--Sobic010G192500 Sobic004G317200 Sobic004G317200 Sobic006G058000--Sobic004G317200 Sobic003G089300 Sobic003G089300 Sobic006G058000--Sobic003G089300 Sobic001G390400 Sobic001G390400 Sobic006G058000--Sobic001G390400 Sobic006G058000--Sobic001G470200 Sobic008G097700 Sobic008G097700 Sobic006G058000--Sobic008G097700 Sobic010G020600--Sobic004G317200 Sobic010G020600--Sobic004G248100 Sobic003G339600 Sobic003G339600 Sobic010G020600--Sobic003G339600 Sobic010G020600--Sobic003G070600 Sobic009G235700 Sobic009G235700 Sobic010G020600--Sobic009G235700 Sobic010G020600--Sobic007G160300 Sobic003G018700 Sobic003G018700 Sobic010G020600--Sobic003G018700 Sobic010G020600--Sobic008G097700 Sobic010G020600--Sobic001G221900 Sobic001G221900--Sobic003G070600 Sobic001G221900--Sobic009G235700 Sobic001G221900--Sobic010G020600 Sobic001G221900--Sobic010G078700 Sobic001G221900--Sobic003G339600 Sobic001G221900--Sobic001G199400 Sobic001G221900--Sobic004G248100 Sobic001G221900--Sobic001G074000 Sobic001G221900--Sobic003G113500 Sobic004G248100--Sobic002G032500 Sobic004G248100--Sobic003G113500 Sobic004G248100--Sobic010G020600 Sobic004G248100--Sobic004G357000 Sobic003G309400 Sobic003G309400 Sobic004G248100--Sobic003G309400 Sobic003G338200 Sobic003G338200 Sobic004G248100--Sobic003G338200 Sobic004G248100--Sobic003G339600 Sobic006G044200 Sobic006G044200 Sobic004G248100--Sobic006G044200 Sobic007G094200 Sobic007G094200 Sobic004G248100--Sobic007G094200 Sobic004G274600--Sobic007G165800 Sobic004G274600--Sobic004G211700 Sobic004G274600--Sobic001G434100 Sobic004G274600--Sobic001G286700 Sobic001G207600 Sobic001G207600 Sobic004G274600--Sobic001G207600 Sobic004G274600--Sobic008G097700 Sobic008G008100 Sobic008G008100 Sobic004G274600--Sobic008G008100 Sobic004G274600--Sobic003G027100 Sobic003G298700 Sobic003G298700 Sobic004G274600--Sobic003G298700 Sobic001G470200--Sobic004G357000 Sobic001G470200--Sobic004G317200 Sobic001G470200--Sobic010G020600 Sobic007G032100 Sobic007G032100 Sobic001G470200--Sobic007G032100 Sobic001G470200--Sobic007G165800 Sobic001G470200--Sobic004G274600 Sobic001G470200--Sobic003G089300 Sobic001G470200--Sobic008G097700 Sobic001G470200--Sobic001G434100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.