Gene annotation
Transcriptome id Sobic.003G070600.2,Sobic.003G070600.3
Synonym Sb03g005980
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
UniProt C5XPZ4
Pfam PF00106
Panther DB PTHR24320 PTHR24320:SF81
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT2G37540 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os01g05840.2,LOC_Os01g05840.1 : oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
MaizeGDB (Corn) Zm00025a023445
Brachypodium KQK02745 , KQK02746
Barley HORVU5Hr1G075530.12 , HORVU5Hr1G075530.11 , HORVU5Hr1G075530.10 , HORVU5Hr1G075530.7 , HORVU5Hr1G075530.9 , HORVU5Hr1G075530.8 , HORVU3Hr1G013970.5 , HORVU3Hr1G013970.4 , HORVU3Hr1G013970.7 , HORVU3Hr1G013970.6 , HORVU3Hr1G013970.1 , HORVU3Hr1G013970.3 , HORVU3Hr1G013970.2 , HORVU3Hr1G013970.9 , HORVU3Hr1G013970.8
Wheat TraesCS3A02G077400 , TraesCS3B02G091800 , TraesCS3B02G091800 , TraesCS5D02G287000 , TraesCS5A02G280400 , TraesCS3D02G077500 , TraesCS3D02G077500 , TraesCS3D02G077500 , TraesCS3D02G077500 , TraesCS3A02G077400 , TraesCS3A02G077400 , TraesCS5B02G279400
Populus -


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cDNA sequences
Sobic.003G070600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G074000 receptor protein kinase CLAVATA1 precursor, putative, expressed -
2 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
3 Sobic.007G160300 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
4 Sobic.001G199400 monocopper oxidase, putative, expressed -
5 Sobic.003G113500 MFS18 protein precursor, putative, expressed -
6 Sobic.001G221900 3-ketoacyl-CoA synthase precursor, putative, expressed K15397: 3-ketoacyl-CoA synthase
7 Sobic.004G274600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
8 Sobic.004G283800 dehydration response related protein, putative, expressed -
9 Sobic.004G248100 endoglucanase, putative, expressed -
10 Sobic.003G339600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
11 Sobic.010G014700 expressed protein -
12 Sobic.008G097700 transmembrane amino acid transporter protein, putative, expressed -
13 Sobic.002G071850 - -
14 Sobic.003G356600 ATROPGEF7/ROPGEF7, putative, expressed -
15 Sobic.004G211700 - -
16 Sobic.001G470200 membrane associated DUF588 domain containing protein, putative, expressed -
17 Sobic.006G058000 OsSCP24 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
18 Sobic.004G357000 inactive receptor kinase At2g26730 precursor, putative, expressed -
19 Sobic.010G078700 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
20 Sobic.003G309400 OsSub4 - Putative Subtilisin homologue, expressed -


Gene co-expression network
sample Sobic003G070600 Sobic003G070600 Sobic001G074000 Sobic001G074000 Sobic003G070600--Sobic001G074000 Sobic010G020600 Sobic010G020600 Sobic003G070600--Sobic010G020600 Sobic007G160300 Sobic007G160300 Sobic003G070600--Sobic007G160300 Sobic001G199400 Sobic001G199400 Sobic003G070600--Sobic001G199400 Sobic003G113500 Sobic003G113500 Sobic003G070600--Sobic003G113500 Sobic001G221900 Sobic001G221900 Sobic003G070600--Sobic001G221900 Sobic004G274600 Sobic004G274600 Sobic003G070600--Sobic004G274600 Sobic004G283800 Sobic004G283800 Sobic003G070600--Sobic004G283800 Sobic004G248100 Sobic004G248100 Sobic003G070600--Sobic004G248100 Sobic001G522300 Sobic001G522300 Sobic001G074000--Sobic001G522300 Sobic001G074000--Sobic003G070600 Sobic009G129700 Sobic009G129700 Sobic001G074000--Sobic009G129700 Sobic001G074000--Sobic007G160300 Sobic001G074000--Sobic001G199400 Sobic001G493900 Sobic001G493900 Sobic001G074000--Sobic001G493900 Sobic003G019900 Sobic003G019900 Sobic001G074000--Sobic003G019900 Sobic010G014700 Sobic010G014700 Sobic001G074000--Sobic010G014700 Sobic001G074000--Sobic010G020600 Sobic004G317200 Sobic004G317200 Sobic010G020600--Sobic004G317200 Sobic010G020600--Sobic004G248100 Sobic003G339600 Sobic003G339600 Sobic010G020600--Sobic003G339600 Sobic010G020600--Sobic003G070600 Sobic009G235700 Sobic009G235700 Sobic010G020600--Sobic009G235700 Sobic010G020600--Sobic007G160300 Sobic003G018700 Sobic003G018700 Sobic010G020600--Sobic003G018700 Sobic008G097700 Sobic008G097700 Sobic010G020600--Sobic008G097700 Sobic010G020600--Sobic001G221900 Sobic003G089300 Sobic003G089300 Sobic007G160300--Sobic003G089300 Sobic007G160300--Sobic003G070600 Sobic006G058000 Sobic006G058000 Sobic007G160300--Sobic006G058000 Sobic007G160300--Sobic010G020600 Sobic007G160300--Sobic001G074000 Sobic003G309400 Sobic003G309400 Sobic007G160300--Sobic003G309400 Sobic001G155700 Sobic001G155700 Sobic007G160300--Sobic001G155700 Sobic004G357000 Sobic004G357000 Sobic007G160300--Sobic004G357000 Sobic007G160300--Sobic001G493900 Sobic001G199400--Sobic010G014700 Sobic001G199400--Sobic003G113500 Sobic003G027100 Sobic003G027100 Sobic001G199400--Sobic003G027100 Sobic003G338700 Sobic003G338700 Sobic001G199400--Sobic003G338700 Sobic007G165800 Sobic007G165800 Sobic001G199400--Sobic007G165800 Sobic010G078700 Sobic010G078700 Sobic001G199400--Sobic010G078700 Sobic001G199400--Sobic003G070600 Sobic007G180200 Sobic007G180200 Sobic001G199400--Sobic007G180200 Sobic001G199400--Sobic001G074000 Sobic003G113500--Sobic001G199400 Sobic003G113500--Sobic004G357000 Sobic003G113500--Sobic004G248100 Sobic004G211700 Sobic004G211700 Sobic003G113500--Sobic004G211700 Sobic003G113500--Sobic003G027100 Sobic003G113500--Sobic010G078700 Sobic003G113500--Sobic003G070600 Sobic004G342000 Sobic004G342000 Sobic003G113500--Sobic004G342000 Sobic002G032500 Sobic002G032500 Sobic003G113500--Sobic002G032500 Sobic001G221900--Sobic003G070600 Sobic001G221900--Sobic009G235700 Sobic001G221900--Sobic010G020600 Sobic001G221900--Sobic010G078700 Sobic001G221900--Sobic003G339600 Sobic001G221900--Sobic001G199400 Sobic001G221900--Sobic004G248100 Sobic001G221900--Sobic001G074000 Sobic001G221900--Sobic003G113500 Sobic004G274600--Sobic007G165800 Sobic004G274600--Sobic004G211700 Sobic001G434100 Sobic001G434100 Sobic004G274600--Sobic001G434100 Sobic001G286700 Sobic001G286700 Sobic004G274600--Sobic001G286700 Sobic001G207600 Sobic001G207600 Sobic004G274600--Sobic001G207600 Sobic004G274600--Sobic008G097700 Sobic008G008100 Sobic008G008100 Sobic004G274600--Sobic008G008100 Sobic004G274600--Sobic003G027100 Sobic003G298700 Sobic003G298700 Sobic004G274600--Sobic003G298700 Sobic004G283800--Sobic001G207600 Sobic004G283800--Sobic004G274600 Sobic004G283800--Sobic003G339600 Sobic002G229700 Sobic002G229700 Sobic004G283800--Sobic002G229700 Sobic004G283800--Sobic003G070600 Sobic004G283800--Sobic010G020600 Sobic004G283800--Sobic009G235700 Sobic004G283800--Sobic004G357000 Sobic004G283800--Sobic003G113500 Sobic004G248100--Sobic002G032500 Sobic004G248100--Sobic003G113500 Sobic004G248100--Sobic010G020600 Sobic004G248100--Sobic004G357000 Sobic004G248100--Sobic003G309400 Sobic003G338200 Sobic003G338200 Sobic004G248100--Sobic003G338200 Sobic004G248100--Sobic003G339600 Sobic006G044200 Sobic006G044200 Sobic004G248100--Sobic006G044200 Sobic007G094200 Sobic007G094200 Sobic004G248100--Sobic007G094200
Octagon: transcription factors


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