Gene annotation
Transcriptome id Sobic.003G356600.1
Synonym ROPGEF7, ATROPGEF7, Sb03g039890
Functional annotation ATROPGEF7/ROPGEF7, putative, expressed
UniProt C5XPT5
Pfam PF03759
Panther DB PTHR33101 PTHR33101:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005089; Rho guanyl-nucleotide exchange factor activity


Orthologs (automatic annotation)
TAIR AT5G02010 : RHO guanyl-nucleotide exchange factor 7
RAP-DB (Rice) LOC_Os01g62990.1 : ATROPGEF7/ROPGEF7, putative, expressed
MaizeGDB (Corn) Zm00025a037192 , Zm00025a026849
Brachypodium KQK10577 , PNT71128 , PNT71127 , KQK05954
Barley HORVU3Hr1G085680.24 , HORVU3Hr1G085680.12 , HORVU3Hr1G085680.13 , HORVU3Hr1G085680.10 , HORVU3Hr1G085680.11 , HORVU3Hr1G085680.16 , HORVU3Hr1G085680.14 , HORVU3Hr1G085680.15 , HORVU5Hr1G085510.1 , HORVU1Hr1G072910.10 , HORVU1Hr1G072910.11 , HORVU1Hr1G072910.14 , HORVU1Hr1G072910.1 , HORVU1Hr1G072910.2 , HORVU1Hr1G072910.3 , HORVU1Hr1G072910.6 , HORVU1Hr1G072910.7 , HORVU1Hr1G072910.8 , HORVU1Hr1G072910.9 , HORVU3Hr1G085680.23 , HORVU3Hr1G085680.22 , HORVU3Hr1G085680.21 , HORVU3Hr1G085680.26 , HORVU3Hr1G085680.25 , HORVU3Hr1G085680.1 , HORVU3Hr1G085680.2 , HORVU3Hr1G085680.3 , HORVU3Hr1G085680.6 , HORVU3Hr1G085680.7 , HORVU3Hr1G085680.8 , HORVU3Hr1G085680.9
Wheat TraesCS1D02G280000 , TraesCS5B02G339200 , TraesCS1A02G280900 , TraesCS1A02G280900 , TraesCS3A02G364400 , TraesCS1B02G289900 , TraesCS3B02G396500 , TraesCS3D02G357800 , TraesCS3D02G357800 , TraesCS3D02G357800 , TraesCS3D02G357800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G274600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
2 Sobic.004G211700 - -
3 Sobic.002G363300 - -
4 Sobic.001G199400 monocopper oxidase, putative, expressed -
5 Sobic.008G008100 kelch repeat-containing protein, putative, expressed -
6 Sobic.009G146700 universal stress protein domain containing protein, putative, expressed -
7 Sobic.003G070600 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed -
8 Sobic.002G312200 Highest expression level in primordial inflorescence(PubMedID : 27501690)@"GLW7(Ortholog in rice:Si et al., 2016)"(PubMedID : 31659860)@SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -
9 Sobic.010G014700 expressed protein -
10 Sobic.001G488900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
11 Sobic.004G324500 expressed protein -
12 Sobic.001G473500 domain of unknown function DUF966 domain containing protein, expressed -
13 Sobic.001G286700 homeobox and START domains containing protein, putative, expressed -
14 Sobic.003G027100 keratin, type I cytoskeletal 9, putative, expressed -
15 Sobic.003G300400 expressed protein -
16 Sobic.002G032500 leucine-rich repeat family protein, putative, expressed -
17 Sobic.005G118700 expressed protein -
18 Sobic.010G166300 expressed protein -
19 Sobic.009G023900 homeobox domain containing protein, expressed -
20 Sobic.003G298700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic003G356600 Sobic003G356600 Sobic004G274600 Sobic004G274600 Sobic003G356600--Sobic004G274600 Sobic004G211700 Sobic004G211700 Sobic003G356600--Sobic004G211700 Sobic002G363300 Sobic002G363300 Sobic003G356600--Sobic002G363300 Sobic001G199400 Sobic001G199400 Sobic003G356600--Sobic001G199400 Sobic008G008100 Sobic008G008100 Sobic003G356600--Sobic008G008100 Sobic009G146700 Sobic009G146700 Sobic003G356600--Sobic009G146700 Sobic003G070600 Sobic003G070600 Sobic003G356600--Sobic003G070600 Sobic002G312200 Sobic002G312200 Sobic003G356600--Sobic002G312200 Sobic010G014700 Sobic010G014700 Sobic003G356600--Sobic010G014700 Sobic007G165800 Sobic007G165800 Sobic004G274600--Sobic007G165800 Sobic004G274600--Sobic004G211700 Sobic001G434100 Sobic001G434100 Sobic004G274600--Sobic001G434100 Sobic001G286700 Sobic001G286700 Sobic004G274600--Sobic001G286700 Sobic001G207600 Sobic001G207600 Sobic004G274600--Sobic001G207600 Sobic008G097700 Sobic008G097700 Sobic004G274600--Sobic008G097700 Sobic004G274600--Sobic008G008100 Sobic003G027100 Sobic003G027100 Sobic004G274600--Sobic003G027100 Sobic003G298700 Sobic003G298700 Sobic004G274600--Sobic003G298700 Sobic004G342000 Sobic004G342000 Sobic004G211700--Sobic004G342000 Sobic009G023900 Sobic009G023900 Sobic004G211700--Sobic009G023900 Sobic003G178500 Sobic003G178500 Sobic004G211700--Sobic003G178500 Sobic004G211700--Sobic001G286700 Sobic004G211700--Sobic003G027100 Sobic005G218000 Sobic005G218000 Sobic004G211700--Sobic005G218000 Sobic001G341700 Sobic001G341700 Sobic004G211700--Sobic001G341700 Sobic004G211700--Sobic002G312200 Sobic010G166300 Sobic010G166300 Sobic004G211700--Sobic010G166300 Sobic006G273600 Sobic006G273600 Sobic002G363300--Sobic006G273600 Sobic005G199700 Sobic005G199700 Sobic002G363300--Sobic005G199700 Sobic002G363300--Sobic009G146700 Sobic003G010700 Sobic003G010700 Sobic002G363300--Sobic003G010700 Sobic002G363300--Sobic003G027100 Sobic003G338700 Sobic003G338700 Sobic002G363300--Sobic003G338700 Sobic002G363300--Sobic001G286700 Sobic005G009600 Sobic005G009600 Sobic002G363300--Sobic005G009600 Sobic007G170100 Sobic007G170100 Sobic002G363300--Sobic007G170100 Sobic001G199400--Sobic010G014700 Sobic003G113500 Sobic003G113500 Sobic001G199400--Sobic003G113500 Sobic001G199400--Sobic003G027100 Sobic001G199400--Sobic003G338700 Sobic001G199400--Sobic007G165800 Sobic010G078700 Sobic010G078700 Sobic001G199400--Sobic010G078700 Sobic001G199400--Sobic003G070600 Sobic007G180200 Sobic007G180200 Sobic001G199400--Sobic007G180200 Sobic001G074000 Sobic001G074000 Sobic001G199400--Sobic001G074000 Sobic008G008100--Sobic004G274600 Sobic008G008100--Sobic002G363300 Sobic008G008100--Sobic004G211700 Sobic008G008100--Sobic003G010700 Sobic008G008100--Sobic001G286700 Sobic008G008100--Sobic009G023900 Sobic008G008100--Sobic003G356600 Sobic008G008100--Sobic005G009600 Sobic008G008100--Sobic002G312200 Sobic009G146700--Sobic005G199700 Sobic009G146700--Sobic003G338700 Sobic009G146700--Sobic002G363300 Sobic009G146700--Sobic010G014700 Sobic009G146700--Sobic003G010700 Sobic009G146700--Sobic001G286700 Sobic009G146700--Sobic007G180200 Sobic006G107500 Sobic006G107500 Sobic009G146700--Sobic006G107500 Sobic010G014500 Sobic010G014500 Sobic009G146700--Sobic010G014500 Sobic003G070600--Sobic001G074000 Sobic010G020600 Sobic010G020600 Sobic003G070600--Sobic010G020600 Sobic007G160300 Sobic007G160300 Sobic003G070600--Sobic007G160300 Sobic003G070600--Sobic001G199400 Sobic003G070600--Sobic003G113500 Sobic001G221900 Sobic001G221900 Sobic003G070600--Sobic001G221900 Sobic003G070600--Sobic004G274600 Sobic004G283800 Sobic004G283800 Sobic003G070600--Sobic004G283800 Sobic004G248100 Sobic004G248100 Sobic003G070600--Sobic004G248100 Sobic002G312200--Sobic005G218000 Sobic007G076100 Sobic007G076100 Sobic002G312200--Sobic007G076100 Sobic002G312200--Sobic001G341700 Sobic004G318800 Sobic004G318800 Sobic002G312200--Sobic004G318800 Sobic006G089700 Sobic006G089700 Sobic002G312200--Sobic006G089700 Sobic005G118700 Sobic005G118700 Sobic002G312200--Sobic005G118700 Sobic006G092300 Sobic006G092300 Sobic002G312200--Sobic006G092300 Sobic002G312300 Sobic002G312300 Sobic002G312200--Sobic002G312300 Sobic002G312200--Sobic003G178500 Sobic010G014700--Sobic003G338700 Sobic010G014700--Sobic009G146700 Sobic010G014700--Sobic001G199400 Sobic010G014700--Sobic005G199700 Sobic010G014700--Sobic002G363300 Sobic010G014700--Sobic010G014500 Sobic010G014700--Sobic007G180200 Sobic010G014700--Sobic003G027100 Sobic004G215400 Sobic004G215400 Sobic010G014700--Sobic004G215400
Octagon: transcription factors


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