Gene annotation
Transcriptome id Sobic.009G023900.1
Synonym PRS1, PRS, WOX3, Sb09g002010
Functional annotation homeobox domain containing protein, expressed
UniProt A0A1Z5R1J1
Pfam PF00046
Panther DB PTHR24326 PTHR24326:SF115
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT2G28610 : Homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os05g02730.1 : homeobox domain containing protein, expressed
MaizeGDB (Corn) Zm00025a040785 , Zm00025a009417 , Zm00025a012986 , Zm00025a057205 , Zm00025a033532 , Zm00025a026819 , Zm00025a039612 , Zm00025a026917
Brachypodium KQJ85141 , KQJ84981 , KQJ92701 , KQK10633 , KQK07789
Barley HORVU1Hr1G010580.3 , HORVU1Hr1G010580.2 , HORVU1Hr1G010580.1 , HORVU3Hr1G085050.1 , HORVU3Hr1G085050.3 , HORVU3Hr1G085050.4 , HORVU3Hr1G086450.1 , HORVU5Hr1G049190.2 , HORVU5Hr1G049190.3 , HORVU5Hr1G049190.1 , HORVU2Hr1G113820.8 , HORVU2Hr1G113820.2 , HORVU2Hr1G113820.5 , HORVU2Hr1G113820.4 , HORVU2Hr1G113820.7
Wheat TraesCS5D02G097400 , TraesCS1B02G069000 , TraesCS3D02G352500 , TraesCS3B02G399800 , TraesCS2D02G515600 , TraesCS2A02G514000 , TraesCS1D02G054000 , TraesCS5A02G085000 , TraesCS3D02G361100 , TraesCS3B02G391100 , TraesCS2B02G542600 , TraesCS5D02G162600 , TraesCS3A02G368100 , TraesCS3A02G358200 , TraesCS5B02G156400 , TraesCS1A02G052000 , TraesCS3D02G352600 , TraesCS2A02G491900 , TraesCS5A02G157300 , TraesCS5B02G091000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G166300 expressed protein -
2 Sobic.003G178500 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
3 Sobic.005G009600 pectinesterase, putative, expressed K01051: pectinesterase
4 Sobic.005G218000 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed -
5 Sobic.004G211700 - -
6 Sobic.007G076100 transferase family protein, putative, expressed -
7 Sobic.001G341700 "GS3(Ortholog in rice:Mao et al., 2010(PubMedID : 31659843)@ Li et al., 2010)"(PubMedID : 32497208)@keratin-associated protein 5-4, putative, expressed -
8 Sobic.002G312200 Highest expression level in primordial inflorescence(PubMedID : 27501690)@"GLW7(Ortholog in rice:Si et al., 2016)"(PubMedID : 31659860)@SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -
9 Sobic.006G005900 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
10 Sobic.002G312300 SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -
11 Sobic.003G027100 keratin, type I cytoskeletal 9, putative, expressed -
12 Sobic.004G318800 SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
13 Sobic.004G324500 expressed protein -
14 Sobic.010G235300 acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
15 Sobic.005G110900 expressed protein -
16 Sobic.002G416400 basic helix-loop-helix domain containing protein, expressed -
17 Sobic.001G286700 homeobox and START domains containing protein, putative, expressed -
18 Sobic.002G363300 - -
19 Sobic.006G273600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.006G117900 brevis radix, putative, expressed -


Gene co-expression network
sample Sobic009G023900 Sobic009G023900 Sobic010G166300 Sobic010G166300 Sobic009G023900--Sobic010G166300 Sobic003G178500 Sobic003G178500 Sobic009G023900--Sobic003G178500 Sobic005G009600 Sobic005G009600 Sobic009G023900--Sobic005G009600 Sobic005G218000 Sobic005G218000 Sobic009G023900--Sobic005G218000 Sobic004G211700 Sobic004G211700 Sobic009G023900--Sobic004G211700 Sobic007G076100 Sobic007G076100 Sobic009G023900--Sobic007G076100 Sobic001G341700 Sobic001G341700 Sobic009G023900--Sobic001G341700 Sobic002G312200 Sobic002G312200 Sobic009G023900--Sobic002G312200 Sobic006G005900 Sobic006G005900 Sobic009G023900--Sobic006G005900 Sobic010G166300--Sobic009G023900 Sobic010G166300--Sobic005G009600 Sobic010G166300--Sobic003G178500 Sobic010G166300--Sobic007G076100 Sobic010G166300--Sobic001G341700 Sobic010G166300--Sobic002G312200 Sobic002G312300 Sobic002G312300 Sobic010G166300--Sobic002G312300 Sobic003G027100 Sobic003G027100 Sobic010G166300--Sobic003G027100 Sobic010G166300--Sobic005G218000 Sobic003G178500--Sobic007G076100 Sobic002G416400 Sobic002G416400 Sobic003G178500--Sobic002G416400 Sobic003G178500--Sobic005G218000 Sobic003G178500--Sobic010G166300 Sobic004G318800 Sobic004G318800 Sobic003G178500--Sobic004G318800 Sobic003G178500--Sobic001G341700 Sobic003G178500--Sobic009G023900 Sobic003G178500--Sobic003G027100 Sobic003G178500--Sobic004G211700 Sobic006G273600 Sobic006G273600 Sobic005G009600--Sobic006G273600 Sobic005G009600--Sobic010G166300 Sobic007G170100 Sobic007G170100 Sobic005G009600--Sobic007G170100 Sobic005G009600--Sobic009G023900 Sobic010G235300 Sobic010G235300 Sobic005G009600--Sobic010G235300 Sobic002G363300 Sobic002G363300 Sobic005G009600--Sobic002G363300 Sobic001G286700 Sobic001G286700 Sobic005G009600--Sobic001G286700 Sobic005G009600--Sobic003G027100 Sobic005G009600--Sobic003G178500 Sobic005G218000--Sobic007G076100 Sobic005G218000--Sobic001G341700 Sobic005G218000--Sobic002G312200 Sobic006G092300 Sobic006G092300 Sobic005G218000--Sobic006G092300 Sobic005G218000--Sobic004G318800 Sobic006G079500 Sobic006G079500 Sobic005G218000--Sobic006G079500 Sobic001G491400 Sobic001G491400 Sobic005G218000--Sobic001G491400 Sobic001G266100 Sobic001G266100 Sobic005G218000--Sobic001G266100 Sobic010G049600 Sobic010G049600 Sobic005G218000--Sobic010G049600 Sobic004G342000 Sobic004G342000 Sobic004G211700--Sobic004G342000 Sobic004G211700--Sobic009G023900 Sobic004G211700--Sobic003G178500 Sobic004G211700--Sobic001G286700 Sobic004G211700--Sobic003G027100 Sobic004G211700--Sobic005G218000 Sobic004G211700--Sobic001G341700 Sobic004G211700--Sobic002G312200 Sobic004G211700--Sobic010G166300 Sobic007G076100--Sobic004G318800 Sobic007G076100--Sobic005G218000 Sobic007G076100--Sobic001G341700 Sobic007G076100--Sobic006G079500 Sobic007G076100--Sobic003G178500 Sobic007G076100--Sobic006G092300 Sobic007G076100--Sobic002G312200 Sobic006G089700 Sobic006G089700 Sobic007G076100--Sobic006G089700 Sobic007G076100--Sobic002G416400 Sobic001G341700--Sobic007G076100 Sobic001G341700--Sobic004G318800 Sobic001G341700--Sobic005G218000 Sobic001G341700--Sobic006G079500 Sobic001G341700--Sobic006G092300 Sobic001G341700--Sobic006G089700 Sobic001G341700--Sobic002G312200 Sobic002G029700 Sobic002G029700 Sobic001G341700--Sobic002G029700 Sobic001G341700--Sobic003G178500 Sobic002G312200--Sobic005G218000 Sobic002G312200--Sobic007G076100 Sobic002G312200--Sobic001G341700 Sobic002G312200--Sobic004G318800 Sobic002G312200--Sobic006G089700 Sobic005G118700 Sobic005G118700 Sobic002G312200--Sobic005G118700 Sobic002G312200--Sobic006G092300 Sobic002G312200--Sobic002G312300 Sobic002G312200--Sobic003G178500 Sobic006G005800 Sobic006G005800 Sobic006G005900--Sobic006G005800 Sobic006G005900--Sobic009G023900 Sobic003G090650 Sobic003G090650 Sobic006G005900--Sobic003G090650 Sobic005G110900 Sobic005G110900 Sobic006G005900--Sobic005G110900 Sobic002G353100 Sobic002G353100 Sobic006G005900--Sobic002G353100 Sobic004G324500 Sobic004G324500 Sobic006G005900--Sobic004G324500 Sobic001G447800 Sobic001G447800 Sobic006G005900--Sobic001G447800 Sobic003G382400 Sobic003G382400 Sobic006G005900--Sobic003G382400 Sobic006G005900--Sobic005G218000
Octagon: transcription factors


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