Gene annotation
Transcriptome id Sobic.002G312300.2,Sobic.002G312300.1
Synonym SPL4
Functional annotation SQUAMOSA promoter binding-like transcription factor (PubMedID : 27016024)
OsSPL13 - SBP-box gene family member, expressed
UniProt A0A1B6QED2 , A0A1W0W6G4
Pfam PF03110
Panther DB PTHR31251 PTHR31251:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G53160 : squamosa promoter binding protein-like 8,squamosa promoter binding protein-like 4
RAP-DB (Rice) LOC_Os07g32170.1 : OsSPL13 - SBP-box gene family member, expressed
MaizeGDB (Corn) Zm00025a014741 , Zm00025a048156
Brachypodium KQJ83945 , KQK16095
Barley -
Wheat TraesCS2B02G250900 , TraesCS2A02G232400 , TraesCS2D02G232800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G312200 Highest expression level in primordial inflorescence(PubMedID : 27501690)@"GLW7(Ortholog in rice:Si et al., 2016)"(PubMedID : 31659860)@SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -
2 Sobic.010G166300 expressed protein -
3 Sobic.007G076100 transferase family protein, putative, expressed -
4 Sobic.003G178500 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
5 Sobic.005G218000 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed -
6 Sobic.003G027100 keratin, type I cytoskeletal 9, putative, expressed -
7 Sobic.009G023900 homeobox domain containing protein, expressed -
8 Sobic.001G341700 "GS3(Ortholog in rice:Mao et al., 2010(PubMedID : 31659843)@ Li et al., 2010)"(PubMedID : 32497208)@keratin-associated protein 5-4, putative, expressed -
9 Sobic.004G318800 SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
10 Sobic.004G211700 - -
11 Sobic.005G009600 pectinesterase, putative, expressed K01051: pectinesterase
12 Sobic.002G363300 - -
13 Sobic.006G092300 ZOS4-06 - C2H2 zinc finger protein, expressed -
14 Sobic.006G089700 LTPL94 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
15 Sobic.004G324500 expressed protein -
16 Sobic.006G117900 brevis radix, putative, expressed -
17 Sobic.005G118700 expressed protein -
18 Sobic.006G079500 AMP-binding domain containing protein, expressed -
19 Sobic.005G034500 receptor kinase, putative, expressed -
20 Sobic.002G416400 basic helix-loop-helix domain containing protein, expressed -


Gene co-expression network
sample Sobic002G312300 Sobic002G312300 Sobic002G312200 Sobic002G312200 Sobic002G312300--Sobic002G312200 Sobic010G166300 Sobic010G166300 Sobic002G312300--Sobic010G166300 Sobic007G076100 Sobic007G076100 Sobic002G312300--Sobic007G076100 Sobic003G178500 Sobic003G178500 Sobic002G312300--Sobic003G178500 Sobic005G218000 Sobic005G218000 Sobic002G312300--Sobic005G218000 Sobic003G027100 Sobic003G027100 Sobic002G312300--Sobic003G027100 Sobic009G023900 Sobic009G023900 Sobic002G312300--Sobic009G023900 Sobic001G341700 Sobic001G341700 Sobic002G312300--Sobic001G341700 Sobic004G318800 Sobic004G318800 Sobic002G312300--Sobic004G318800 Sobic002G312200--Sobic005G218000 Sobic002G312200--Sobic007G076100 Sobic002G312200--Sobic001G341700 Sobic002G312200--Sobic004G318800 Sobic006G089700 Sobic006G089700 Sobic002G312200--Sobic006G089700 Sobic005G118700 Sobic005G118700 Sobic002G312200--Sobic005G118700 Sobic006G092300 Sobic006G092300 Sobic002G312200--Sobic006G092300 Sobic002G312200--Sobic002G312300 Sobic002G312200--Sobic003G178500 Sobic010G166300--Sobic009G023900 Sobic005G009600 Sobic005G009600 Sobic010G166300--Sobic005G009600 Sobic010G166300--Sobic003G178500 Sobic010G166300--Sobic007G076100 Sobic010G166300--Sobic001G341700 Sobic010G166300--Sobic002G312200 Sobic010G166300--Sobic002G312300 Sobic010G166300--Sobic003G027100 Sobic010G166300--Sobic005G218000 Sobic007G076100--Sobic004G318800 Sobic007G076100--Sobic005G218000 Sobic007G076100--Sobic001G341700 Sobic006G079500 Sobic006G079500 Sobic007G076100--Sobic006G079500 Sobic007G076100--Sobic003G178500 Sobic007G076100--Sobic006G092300 Sobic007G076100--Sobic002G312200 Sobic007G076100--Sobic006G089700 Sobic002G416400 Sobic002G416400 Sobic007G076100--Sobic002G416400 Sobic003G178500--Sobic007G076100 Sobic003G178500--Sobic002G416400 Sobic003G178500--Sobic005G218000 Sobic003G178500--Sobic010G166300 Sobic003G178500--Sobic004G318800 Sobic003G178500--Sobic001G341700 Sobic003G178500--Sobic009G023900 Sobic003G178500--Sobic003G027100 Sobic004G211700 Sobic004G211700 Sobic003G178500--Sobic004G211700 Sobic005G218000--Sobic007G076100 Sobic005G218000--Sobic001G341700 Sobic005G218000--Sobic002G312200 Sobic005G218000--Sobic006G092300 Sobic005G218000--Sobic004G318800 Sobic005G218000--Sobic006G079500 Sobic001G491400 Sobic001G491400 Sobic005G218000--Sobic001G491400 Sobic001G266100 Sobic001G266100 Sobic005G218000--Sobic001G266100 Sobic010G049600 Sobic010G049600 Sobic005G218000--Sobic010G049600 Sobic003G027100--Sobic003G178500 Sobic002G363300 Sobic002G363300 Sobic003G027100--Sobic002G363300 Sobic001G286700 Sobic001G286700 Sobic003G027100--Sobic001G286700 Sobic010G235300 Sobic010G235300 Sobic003G027100--Sobic010G235300 Sobic003G027100--Sobic004G211700 Sobic003G027100--Sobic010G166300 Sobic007G165800 Sobic007G165800 Sobic003G027100--Sobic007G165800 Sobic005G034500 Sobic005G034500 Sobic003G027100--Sobic005G034500 Sobic003G027100--Sobic002G312300 Sobic009G023900--Sobic010G166300 Sobic009G023900--Sobic003G178500 Sobic009G023900--Sobic005G009600 Sobic009G023900--Sobic005G218000 Sobic009G023900--Sobic004G211700 Sobic009G023900--Sobic007G076100 Sobic009G023900--Sobic001G341700 Sobic009G023900--Sobic002G312200 Sobic006G005900 Sobic006G005900 Sobic009G023900--Sobic006G005900 Sobic001G341700--Sobic007G076100 Sobic001G341700--Sobic004G318800 Sobic001G341700--Sobic005G218000 Sobic001G341700--Sobic006G079500 Sobic001G341700--Sobic006G092300 Sobic001G341700--Sobic006G089700 Sobic001G341700--Sobic002G312200 Sobic002G029700 Sobic002G029700 Sobic001G341700--Sobic002G029700 Sobic001G341700--Sobic003G178500 Sobic004G318800--Sobic007G076100 Sobic004G318800--Sobic006G079500 Sobic004G318800--Sobic001G341700 Sobic004G318800--Sobic006G092300 Sobic004G318800--Sobic005G218000 Sobic004G318800--Sobic006G089700 Sobic007G206000 Sobic007G206000 Sobic004G318800--Sobic007G206000 Sobic007G048500 Sobic007G048500 Sobic004G318800--Sobic007G048500 Sobic005G226500 Sobic005G226500 Sobic004G318800--Sobic005G226500
Octagon: transcription factors


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