Gene annotation
Transcriptome id Sobic.003G027100.1
Synonym Sb03g002540, PDF1
Functional annotation keratin, type I cytoskeletal 9, putative, expressed
UniProt C5XL86
Pfam -
Panther DB PTHR33210 PTHR33210:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G42840 : protodermal factor 1
RAP-DB (Rice) LOC_Os01g10490.1 : keratin, type I cytoskeletal 9, putative, expressed
MaizeGDB (Corn) Zm00025a042426 , Zm00025a022982
Brachypodium KQK03205
Barley HORVU3Hr1G026690.5 , HORVU3Hr1G026690.1 , HORVU3Hr1G026690.2
Wheat TraesCS3D02G140300 , TraesCS3B02G157800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G027100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G178500 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
2 Sobic.002G363300 - -
3 Sobic.001G286700 homeobox and START domains containing protein, putative, expressed -
4 Sobic.010G235300 acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
5 Sobic.004G211700 - -
6 Sobic.010G166300 expressed protein -
7 Sobic.007G165800 SLG(Ortholog in rice:Feng et al. (2016))(PubMedID : 31659908)@transferase family protein, putative, expressed -
8 Sobic.005G034500 receptor kinase, putative, expressed -
9 Sobic.002G312300 SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -
10 Sobic.005G009600 pectinesterase, putative, expressed K01051: pectinesterase
11 Sobic.001G199400 monocopper oxidase, putative, expressed -
12 Sobic.006G273600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G113500 MFS18 protein precursor, putative, expressed -
14 Sobic.005G199700 leucine-rich repeat family protein, putative, expressed -
15 Sobic.007G180200 NC domain-containing protein, putative, expressed -
16 Sobic.003G338700 LTPL16 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.009G023900 homeobox domain containing protein, expressed -
18 Sobic.007G170100 male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
19 Sobic.002G416400 basic helix-loop-helix domain containing protein, expressed -
20 Sobic.007G076100 transferase family protein, putative, expressed -


Gene co-expression network
sample Sobic003G027100 Sobic003G027100 Sobic003G178500 Sobic003G178500 Sobic003G027100--Sobic003G178500 Sobic002G363300 Sobic002G363300 Sobic003G027100--Sobic002G363300 Sobic001G286700 Sobic001G286700 Sobic003G027100--Sobic001G286700 Sobic010G235300 Sobic010G235300 Sobic003G027100--Sobic010G235300 Sobic004G211700 Sobic004G211700 Sobic003G027100--Sobic004G211700 Sobic010G166300 Sobic010G166300 Sobic003G027100--Sobic010G166300 Sobic007G165800 Sobic007G165800 Sobic003G027100--Sobic007G165800 Sobic005G034500 Sobic005G034500 Sobic003G027100--Sobic005G034500 Sobic002G312300 Sobic002G312300 Sobic003G027100--Sobic002G312300 Sobic007G076100 Sobic007G076100 Sobic003G178500--Sobic007G076100 Sobic002G416400 Sobic002G416400 Sobic003G178500--Sobic002G416400 Sobic005G218000 Sobic005G218000 Sobic003G178500--Sobic005G218000 Sobic003G178500--Sobic010G166300 Sobic004G318800 Sobic004G318800 Sobic003G178500--Sobic004G318800 Sobic001G341700 Sobic001G341700 Sobic003G178500--Sobic001G341700 Sobic009G023900 Sobic009G023900 Sobic003G178500--Sobic009G023900 Sobic003G178500--Sobic003G027100 Sobic003G178500--Sobic004G211700 Sobic006G273600 Sobic006G273600 Sobic002G363300--Sobic006G273600 Sobic005G199700 Sobic005G199700 Sobic002G363300--Sobic005G199700 Sobic009G146700 Sobic009G146700 Sobic002G363300--Sobic009G146700 Sobic003G010700 Sobic003G010700 Sobic002G363300--Sobic003G010700 Sobic002G363300--Sobic003G027100 Sobic003G338700 Sobic003G338700 Sobic002G363300--Sobic003G338700 Sobic002G363300--Sobic001G286700 Sobic005G009600 Sobic005G009600 Sobic002G363300--Sobic005G009600 Sobic007G170100 Sobic007G170100 Sobic002G363300--Sobic007G170100 Sobic001G286700--Sobic010G235300 Sobic001G286700--Sobic003G027100 Sobic001G286700--Sobic002G363300 Sobic001G286700--Sobic004G211700 Sobic001G286700--Sobic006G273600 Sobic001G473500 Sobic001G473500 Sobic001G286700--Sobic001G473500 Sobic001G286700--Sobic003G338700 Sobic001G286700--Sobic005G199700 Sobic001G286700--Sobic007G165800 Sobic010G235300--Sobic001G286700 Sobic010G235300--Sobic005G009600 Sobic010G235300--Sobic006G273600 Sobic010G235300--Sobic003G027100 Sobic010G235300--Sobic007G170100 Sobic010G235300--Sobic007G165800 Sobic010G235300--Sobic010G166300 Sobic010G235300--Sobic003G178500 Sobic010G235300--Sobic002G363300 Sobic004G342000 Sobic004G342000 Sobic004G211700--Sobic004G342000 Sobic004G211700--Sobic009G023900 Sobic004G211700--Sobic003G178500 Sobic004G211700--Sobic001G286700 Sobic004G211700--Sobic003G027100 Sobic004G211700--Sobic005G218000 Sobic004G211700--Sobic001G341700 Sobic002G312200 Sobic002G312200 Sobic004G211700--Sobic002G312200 Sobic004G211700--Sobic010G166300 Sobic010G166300--Sobic009G023900 Sobic010G166300--Sobic005G009600 Sobic010G166300--Sobic003G178500 Sobic010G166300--Sobic007G076100 Sobic010G166300--Sobic001G341700 Sobic010G166300--Sobic002G312200 Sobic010G166300--Sobic002G312300 Sobic010G166300--Sobic003G027100 Sobic010G166300--Sobic005G218000 Sobic004G274600 Sobic004G274600 Sobic007G165800--Sobic004G274600 Sobic001G434100 Sobic001G434100 Sobic007G165800--Sobic001G434100 Sobic007G180200 Sobic007G180200 Sobic007G165800--Sobic007G180200 Sobic007G165800--Sobic001G286700 Sobic007G165800--Sobic003G027100 Sobic007G165800--Sobic010G235300 Sobic001G199400 Sobic001G199400 Sobic007G165800--Sobic001G199400 Sobic007G165800--Sobic007G170100 Sobic007G165800--Sobic003G338700 Sobic005G034500--Sobic003G027100 Sobic005G034500--Sobic003G178500 Sobic002G032500 Sobic002G032500 Sobic005G034500--Sobic002G032500 Sobic005G055400 Sobic005G055400 Sobic005G034500--Sobic005G055400 Sobic004G357000 Sobic004G357000 Sobic005G034500--Sobic004G357000 Sobic005G034500--Sobic010G166300 Sobic007G211200 Sobic007G211200 Sobic005G034500--Sobic007G211200 Sobic005G034500--Sobic004G211700 Sobic005G034500--Sobic001G341700 Sobic002G312300--Sobic002G312200 Sobic002G312300--Sobic010G166300 Sobic002G312300--Sobic007G076100 Sobic002G312300--Sobic003G178500 Sobic002G312300--Sobic005G218000 Sobic002G312300--Sobic003G027100 Sobic002G312300--Sobic009G023900 Sobic002G312300--Sobic001G341700 Sobic002G312300--Sobic004G318800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.