Gene annotation
Transcriptome id Sobic.003G178500.1
Synonym G2, POP1, CUT1, CER6, KCS6, Sb03g022990
Functional annotation 3-ketoacyl-CoA synthase, putative, expressed
UniProt C5XM80
Pfam PF08541 PF08392
Panther DB PTHR31561 PTHR31561:SF9
NCBI CDD -
KEGG Orthology K15397; 3-ketoacyl-CoA synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process GO:0016020membrane GO:0006633fatty acid biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G68530 : 3-ketoacyl-CoA synthase 6
RAP-DB (Rice) LOC_Os01g34560.1 : 3-ketoacyl-CoA synthase, putative, expressed
MaizeGDB (Corn) Zm00025a020257 , Zm00025a029505 , Zm00025a042702 , Zm00025a028878 , Zm00025a032652 , Zm00025a036399 , Zm00025a021922 , Zm00025a028880
Brachypodium KQJ88016 , KQK01599 , KQK16807 , KQK18680 , KQK08195
Barley HORVU6Hr1G073300.1 , HORVU6Hr1G004830.1 , HORVU3Hr1G054500.1 , HORVU3Hr1G054510.1 , HORVU1Hr1G089710.1 , HORVU1Hr1G089710.2 , HORVU1Hr1G089710.3 , HORVU1Hr1G086760.1 , HORVU5Hr1G087530.1 , HORVU1Hr1G090730.1 , HORVU3Hr1G069880.1 , HORVU3Hr1G069880.2 , HORVU3Hr1G069880.3 , HORVU5Hr1G122360.1 , HORVU5Hr1G122360.2
Wheat TraesCS4A02G065300 , TraesCS4D02G242200 , TraesCS3B02G313800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G076100 transferase family protein, putative, expressed -
2 Sobic.002G416400 basic helix-loop-helix domain containing protein, expressed -
3 Sobic.005G218000 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed -
4 Sobic.010G166300 expressed protein -
5 Sobic.004G318800 SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
6 Sobic.001G341700 "GS3(Ortholog in rice:Mao et al., 2010(PubMedID : 31659843)@ Li et al., 2010)"(PubMedID : 32497208)@keratin-associated protein 5-4, putative, expressed -
7 Sobic.009G023900 homeobox domain containing protein, expressed -
8 Sobic.003G027100 keratin, type I cytoskeletal 9, putative, expressed -
9 Sobic.004G211700 - -
10 Sobic.002G312200 Highest expression level in primordial inflorescence(PubMedID : 27501690)@"GLW7(Ortholog in rice:Si et al., 2016)"(PubMedID : 31659860)@SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -
11 Sobic.006G092300 ZOS4-06 - C2H2 zinc finger protein, expressed -
12 Sobic.004G342000 WAX2, putative, expressed K15404: K15404, aldehyde decarbonylase
13 Sobic.007G094200 expressed protein -
14 Sobic.002G312300 SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -
15 Sobic.006G079500 AMP-binding domain containing protein, expressed -
16 Sobic.005G055400 amidase family protein, putative, expressed -
17 Sobic.002G032500 leucine-rich repeat family protein, putative, expressed -
18 Sobic.005G009600 pectinesterase, putative, expressed K01051: pectinesterase
19 Sobic.006G089700 LTPL94 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.006G117900 brevis radix, putative, expressed -


Gene co-expression network
sample Sobic003G178500 Sobic003G178500 Sobic007G076100 Sobic007G076100 Sobic003G178500--Sobic007G076100 Sobic002G416400 Sobic002G416400 Sobic003G178500--Sobic002G416400 Sobic005G218000 Sobic005G218000 Sobic003G178500--Sobic005G218000 Sobic010G166300 Sobic010G166300 Sobic003G178500--Sobic010G166300 Sobic004G318800 Sobic004G318800 Sobic003G178500--Sobic004G318800 Sobic001G341700 Sobic001G341700 Sobic003G178500--Sobic001G341700 Sobic009G023900 Sobic009G023900 Sobic003G178500--Sobic009G023900 Sobic003G027100 Sobic003G027100 Sobic003G178500--Sobic003G027100 Sobic004G211700 Sobic004G211700 Sobic003G178500--Sobic004G211700 Sobic007G076100--Sobic004G318800 Sobic007G076100--Sobic005G218000 Sobic007G076100--Sobic001G341700 Sobic006G079500 Sobic006G079500 Sobic007G076100--Sobic006G079500 Sobic007G076100--Sobic003G178500 Sobic006G092300 Sobic006G092300 Sobic007G076100--Sobic006G092300 Sobic002G312200 Sobic002G312200 Sobic007G076100--Sobic002G312200 Sobic006G089700 Sobic006G089700 Sobic007G076100--Sobic006G089700 Sobic007G076100--Sobic002G416400 Sobic002G416400--Sobic003G178500 Sobic002G416400--Sobic007G076100 Sobic002G416400--Sobic004G318800 Sobic002G416400--Sobic005G218000 Sobic007G094200 Sobic007G094200 Sobic002G416400--Sobic007G094200 Sobic002G416400--Sobic001G341700 Sobic004G342000 Sobic004G342000 Sobic002G416400--Sobic004G342000 Sobic002G416400--Sobic006G079500 Sobic002G416400--Sobic006G092300 Sobic005G218000--Sobic007G076100 Sobic005G218000--Sobic001G341700 Sobic005G218000--Sobic002G312200 Sobic005G218000--Sobic006G092300 Sobic005G218000--Sobic004G318800 Sobic005G218000--Sobic006G079500 Sobic001G491400 Sobic001G491400 Sobic005G218000--Sobic001G491400 Sobic001G266100 Sobic001G266100 Sobic005G218000--Sobic001G266100 Sobic010G049600 Sobic010G049600 Sobic005G218000--Sobic010G049600 Sobic010G166300--Sobic009G023900 Sobic005G009600 Sobic005G009600 Sobic010G166300--Sobic005G009600 Sobic010G166300--Sobic003G178500 Sobic010G166300--Sobic007G076100 Sobic010G166300--Sobic001G341700 Sobic010G166300--Sobic002G312200 Sobic002G312300 Sobic002G312300 Sobic010G166300--Sobic002G312300 Sobic010G166300--Sobic003G027100 Sobic010G166300--Sobic005G218000 Sobic004G318800--Sobic007G076100 Sobic004G318800--Sobic006G079500 Sobic004G318800--Sobic001G341700 Sobic004G318800--Sobic006G092300 Sobic004G318800--Sobic005G218000 Sobic004G318800--Sobic006G089700 Sobic007G206000 Sobic007G206000 Sobic004G318800--Sobic007G206000 Sobic007G048500 Sobic007G048500 Sobic004G318800--Sobic007G048500 Sobic005G226500 Sobic005G226500 Sobic004G318800--Sobic005G226500 Sobic001G341700--Sobic007G076100 Sobic001G341700--Sobic004G318800 Sobic001G341700--Sobic005G218000 Sobic001G341700--Sobic006G079500 Sobic001G341700--Sobic006G092300 Sobic001G341700--Sobic006G089700 Sobic001G341700--Sobic002G312200 Sobic002G029700 Sobic002G029700 Sobic001G341700--Sobic002G029700 Sobic001G341700--Sobic003G178500 Sobic009G023900--Sobic010G166300 Sobic009G023900--Sobic003G178500 Sobic009G023900--Sobic005G009600 Sobic009G023900--Sobic005G218000 Sobic009G023900--Sobic004G211700 Sobic009G023900--Sobic007G076100 Sobic009G023900--Sobic001G341700 Sobic009G023900--Sobic002G312200 Sobic006G005900 Sobic006G005900 Sobic009G023900--Sobic006G005900 Sobic003G027100--Sobic003G178500 Sobic002G363300 Sobic002G363300 Sobic003G027100--Sobic002G363300 Sobic001G286700 Sobic001G286700 Sobic003G027100--Sobic001G286700 Sobic010G235300 Sobic010G235300 Sobic003G027100--Sobic010G235300 Sobic003G027100--Sobic004G211700 Sobic003G027100--Sobic010G166300 Sobic007G165800 Sobic007G165800 Sobic003G027100--Sobic007G165800 Sobic005G034500 Sobic005G034500 Sobic003G027100--Sobic005G034500 Sobic003G027100--Sobic002G312300 Sobic004G211700--Sobic004G342000 Sobic004G211700--Sobic009G023900 Sobic004G211700--Sobic003G178500 Sobic004G211700--Sobic001G286700 Sobic004G211700--Sobic003G027100 Sobic004G211700--Sobic005G218000 Sobic004G211700--Sobic001G341700 Sobic004G211700--Sobic002G312200 Sobic004G211700--Sobic010G166300
Octagon: transcription factors


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