Gene annotation
Transcriptome id Sobic.005G009600.2
Synonym Sb05g000900
Functional annotation pectinesterase, putative, expressed
UniProt C5Y340
Pfam PF01095
Panther DB PTHR31707 PTHR31707:SF49
NCBI CDD -
KEGG Orthology K01051; pectinesterase
Gene Ontology GO:0005618; cell wall


Orthologs (automatic annotation)
TAIR AT4G00190 : pectin methylesterase 38
RAP-DB (Rice) LOC_Os11g36240.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G273600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.010G166300 expressed protein -
3 Sobic.007G170100 male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
4 Sobic.009G023900 homeobox domain containing protein, expressed -
5 Sobic.010G235300 acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
6 Sobic.002G363300 - -
7 Sobic.001G286700 homeobox and START domains containing protein, putative, expressed -
8 Sobic.003G027100 keratin, type I cytoskeletal 9, putative, expressed -
9 Sobic.003G178500 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
10 Sobic.003G010700 plant-specific domain TIGR01568 family protein, expressed -
11 Sobic.002G312300 SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -
12 Sobic.005G199700 leucine-rich repeat family protein, putative, expressed -
13 Sobic.004G211700 - -
14 Sobic.001G473500 domain of unknown function DUF966 domain containing protein, expressed -
15 Sobic.007G076100 transferase family protein, putative, expressed -
16 Sobic.002G312200 Highest expression level in primordial inflorescence(PubMedID : 27501690)@"GLW7(Ortholog in rice:Si et al., 2016)"(PubMedID : 31659860)@SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -
17 Sobic.006G005900 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
18 Sobic.007G165800 SLG(Ortholog in rice:Feng et al. (2016))(PubMedID : 31659908)@transferase family protein, putative, expressed -
19 Sobic.004G274600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
20 Sobic.008G008100 kelch repeat-containing protein, putative, expressed -


Gene co-expression network
sample Sobic005G009600 Sobic005G009600 Sobic006G273600 Sobic006G273600 Sobic005G009600--Sobic006G273600 Sobic010G166300 Sobic010G166300 Sobic005G009600--Sobic010G166300 Sobic007G170100 Sobic007G170100 Sobic005G009600--Sobic007G170100 Sobic009G023900 Sobic009G023900 Sobic005G009600--Sobic009G023900 Sobic010G235300 Sobic010G235300 Sobic005G009600--Sobic010G235300 Sobic002G363300 Sobic002G363300 Sobic005G009600--Sobic002G363300 Sobic001G286700 Sobic001G286700 Sobic005G009600--Sobic001G286700 Sobic003G027100 Sobic003G027100 Sobic005G009600--Sobic003G027100 Sobic003G178500 Sobic003G178500 Sobic005G009600--Sobic003G178500 Sobic006G273600--Sobic007G170100 Sobic006G273600--Sobic005G009600 Sobic006G273600--Sobic002G363300 Sobic003G010700 Sobic003G010700 Sobic006G273600--Sobic003G010700 Sobic006G273600--Sobic010G235300 Sobic006G273600--Sobic001G286700 Sobic005G199700 Sobic005G199700 Sobic006G273600--Sobic005G199700 Sobic006G273600--Sobic003G027100 Sobic006G273600--Sobic010G166300 Sobic010G166300--Sobic009G023900 Sobic010G166300--Sobic005G009600 Sobic010G166300--Sobic003G178500 Sobic007G076100 Sobic007G076100 Sobic010G166300--Sobic007G076100 Sobic001G341700 Sobic001G341700 Sobic010G166300--Sobic001G341700 Sobic002G312200 Sobic002G312200 Sobic010G166300--Sobic002G312200 Sobic002G312300 Sobic002G312300 Sobic010G166300--Sobic002G312300 Sobic010G166300--Sobic003G027100 Sobic005G218000 Sobic005G218000 Sobic010G166300--Sobic005G218000 Sobic007G170100--Sobic006G273600 Sobic007G170100--Sobic005G009600 Sobic007G170100--Sobic010G235300 Sobic007G170100--Sobic003G010700 Sobic007G170100--Sobic002G363300 Sobic007G170100--Sobic001G286700 Sobic007G165800 Sobic007G165800 Sobic007G170100--Sobic007G165800 Sobic007G170100--Sobic005G199700 Sobic007G170100--Sobic003G027100 Sobic009G023900--Sobic010G166300 Sobic009G023900--Sobic003G178500 Sobic009G023900--Sobic005G009600 Sobic009G023900--Sobic005G218000 Sobic004G211700 Sobic004G211700 Sobic009G023900--Sobic004G211700 Sobic009G023900--Sobic007G076100 Sobic009G023900--Sobic001G341700 Sobic009G023900--Sobic002G312200 Sobic006G005900 Sobic006G005900 Sobic009G023900--Sobic006G005900 Sobic010G235300--Sobic001G286700 Sobic010G235300--Sobic005G009600 Sobic010G235300--Sobic006G273600 Sobic010G235300--Sobic003G027100 Sobic010G235300--Sobic007G170100 Sobic010G235300--Sobic007G165800 Sobic010G235300--Sobic010G166300 Sobic010G235300--Sobic003G178500 Sobic010G235300--Sobic002G363300 Sobic002G363300--Sobic006G273600 Sobic002G363300--Sobic005G199700 Sobic009G146700 Sobic009G146700 Sobic002G363300--Sobic009G146700 Sobic002G363300--Sobic003G010700 Sobic002G363300--Sobic003G027100 Sobic003G338700 Sobic003G338700 Sobic002G363300--Sobic003G338700 Sobic002G363300--Sobic001G286700 Sobic002G363300--Sobic005G009600 Sobic002G363300--Sobic007G170100 Sobic001G286700--Sobic010G235300 Sobic001G286700--Sobic003G027100 Sobic001G286700--Sobic002G363300 Sobic001G286700--Sobic004G211700 Sobic001G286700--Sobic006G273600 Sobic001G473500 Sobic001G473500 Sobic001G286700--Sobic001G473500 Sobic001G286700--Sobic003G338700 Sobic001G286700--Sobic005G199700 Sobic001G286700--Sobic007G165800 Sobic003G027100--Sobic003G178500 Sobic003G027100--Sobic002G363300 Sobic003G027100--Sobic001G286700 Sobic003G027100--Sobic010G235300 Sobic003G027100--Sobic004G211700 Sobic003G027100--Sobic010G166300 Sobic003G027100--Sobic007G165800 Sobic005G034500 Sobic005G034500 Sobic003G027100--Sobic005G034500 Sobic003G027100--Sobic002G312300 Sobic003G178500--Sobic007G076100 Sobic002G416400 Sobic002G416400 Sobic003G178500--Sobic002G416400 Sobic003G178500--Sobic005G218000 Sobic003G178500--Sobic010G166300 Sobic004G318800 Sobic004G318800 Sobic003G178500--Sobic004G318800 Sobic003G178500--Sobic001G341700 Sobic003G178500--Sobic009G023900 Sobic003G178500--Sobic003G027100 Sobic003G178500--Sobic004G211700
Octagon: transcription factors


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