Gene annotation
Transcriptome id Sobic.008G008100.2,Sobic.008G008100.4,Sobic.008G008100.3,Sobic.008G008100.6,Sobic.008G008100.5,Sobic.008G008100.1
Synonym Sb08g000780
Functional annotation kelch repeat-containing protein, putative, expressed
UniProt C5YQ53 , A0A1Z5R499
Pfam PF01344 PF10539 PF10539 PF01344
Panther DB PTHR24412 PTHR24412:SF228
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G01660 : -
RAP-DB (Rice) LOC_Os07g35610.1 : kelch repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a028940
Brachypodium PNT65591
Barley HORVU2Hr1G013180.1 , HORVU5Hr1G047470.2 , HORVU5Hr1G047470.1 , HORVU5Hr1G047470.7 , HORVU5Hr1G047470.9 , HORVU5Hr1G047470.8 , HORVU3Hr1G037570.1 , HORVU5Hr1G047470.13 , HORVU5Hr1G047470.12 , HORVU5Hr1G047470.11 , HORVU5Hr1G047470.10 , HORVU5Hr1G047470.14
Wheat TraesCS5A02G151100 , TraesCS5B02G149600 , TraesCS5B02G149600 , TraesCS5D02G156100 , TraesCS5B02G149600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G274600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
2 Sobic.002G363300 - -
3 Sobic.004G211700 - -
4 Sobic.003G010700 plant-specific domain TIGR01568 family protein, expressed -
5 Sobic.001G286700 homeobox and START domains containing protein, putative, expressed -
6 Sobic.009G023900 homeobox domain containing protein, expressed -
7 Sobic.003G356600 ATROPGEF7/ROPGEF7, putative, expressed -
8 Sobic.005G009600 pectinesterase, putative, expressed K01051: pectinesterase
9 Sobic.002G312200 Highest expression level in primordial inflorescence(PubMedID : 27501690)@"GLW7(Ortholog in rice:Si et al., 2016)"(PubMedID : 31659860)@SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -
10 Sobic.003G027100 keratin, type I cytoskeletal 9, putative, expressed -
11 Sobic.010G166300 expressed protein -
12 Sobic.003G298700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.002G335900 cyclin, putative, expressed K18812: cyclin D6, plant
14 Sobic.006G273600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.004G324500 expressed protein -
16 Sobic.007G170100 male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
17 Sobic.004G102200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09874: aquaporin NIP
18 Sobic.010G087700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock 22 kDa protein, mitochondrial precursor, putative, expressed K13993: HSP20 family protein
19 Sobic.001G473500 domain of unknown function DUF966 domain containing protein, expressed -
20 Sobic.006G005900 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1


Gene co-expression network
sample Sobic008G008100 Sobic008G008100 Sobic004G274600 Sobic004G274600 Sobic008G008100--Sobic004G274600 Sobic002G363300 Sobic002G363300 Sobic008G008100--Sobic002G363300 Sobic004G211700 Sobic004G211700 Sobic008G008100--Sobic004G211700 Sobic003G010700 Sobic003G010700 Sobic008G008100--Sobic003G010700 Sobic001G286700 Sobic001G286700 Sobic008G008100--Sobic001G286700 Sobic009G023900 Sobic009G023900 Sobic008G008100--Sobic009G023900 Sobic003G356600 Sobic003G356600 Sobic008G008100--Sobic003G356600 Sobic005G009600 Sobic005G009600 Sobic008G008100--Sobic005G009600 Sobic002G312200 Sobic002G312200 Sobic008G008100--Sobic002G312200 Sobic007G165800 Sobic007G165800 Sobic004G274600--Sobic007G165800 Sobic004G274600--Sobic004G211700 Sobic001G434100 Sobic001G434100 Sobic004G274600--Sobic001G434100 Sobic004G274600--Sobic001G286700 Sobic001G207600 Sobic001G207600 Sobic004G274600--Sobic001G207600 Sobic008G097700 Sobic008G097700 Sobic004G274600--Sobic008G097700 Sobic004G274600--Sobic008G008100 Sobic003G027100 Sobic003G027100 Sobic004G274600--Sobic003G027100 Sobic003G298700 Sobic003G298700 Sobic004G274600--Sobic003G298700 Sobic006G273600 Sobic006G273600 Sobic002G363300--Sobic006G273600 Sobic005G199700 Sobic005G199700 Sobic002G363300--Sobic005G199700 Sobic009G146700 Sobic009G146700 Sobic002G363300--Sobic009G146700 Sobic002G363300--Sobic003G010700 Sobic002G363300--Sobic003G027100 Sobic003G338700 Sobic003G338700 Sobic002G363300--Sobic003G338700 Sobic002G363300--Sobic001G286700 Sobic002G363300--Sobic005G009600 Sobic007G170100 Sobic007G170100 Sobic002G363300--Sobic007G170100 Sobic004G342000 Sobic004G342000 Sobic004G211700--Sobic004G342000 Sobic004G211700--Sobic009G023900 Sobic003G178500 Sobic003G178500 Sobic004G211700--Sobic003G178500 Sobic004G211700--Sobic001G286700 Sobic004G211700--Sobic003G027100 Sobic005G218000 Sobic005G218000 Sobic004G211700--Sobic005G218000 Sobic001G341700 Sobic001G341700 Sobic004G211700--Sobic001G341700 Sobic004G211700--Sobic002G312200 Sobic010G166300 Sobic010G166300 Sobic004G211700--Sobic010G166300 Sobic003G010700--Sobic002G363300 Sobic003G010700--Sobic006G273600 Sobic003G010700--Sobic007G170100 Sobic006G163300 Sobic006G163300 Sobic003G010700--Sobic006G163300 Sobic003G010700--Sobic005G199700 Sobic002G360600 Sobic002G360600 Sobic003G010700--Sobic002G360600 Sobic003G010700--Sobic009G146700 Sobic003G010700--Sobic003G338700 Sobic010G276600 Sobic010G276600 Sobic003G010700--Sobic010G276600 Sobic010G235300 Sobic010G235300 Sobic001G286700--Sobic010G235300 Sobic001G286700--Sobic003G027100 Sobic001G286700--Sobic002G363300 Sobic001G286700--Sobic004G211700 Sobic001G286700--Sobic006G273600 Sobic001G473500 Sobic001G473500 Sobic001G286700--Sobic001G473500 Sobic001G286700--Sobic003G338700 Sobic001G286700--Sobic005G199700 Sobic001G286700--Sobic007G165800 Sobic009G023900--Sobic010G166300 Sobic009G023900--Sobic003G178500 Sobic009G023900--Sobic005G009600 Sobic009G023900--Sobic005G218000 Sobic009G023900--Sobic004G211700 Sobic007G076100 Sobic007G076100 Sobic009G023900--Sobic007G076100 Sobic009G023900--Sobic001G341700 Sobic009G023900--Sobic002G312200 Sobic006G005900 Sobic006G005900 Sobic009G023900--Sobic006G005900 Sobic003G356600--Sobic004G274600 Sobic003G356600--Sobic004G211700 Sobic003G356600--Sobic002G363300 Sobic001G199400 Sobic001G199400 Sobic003G356600--Sobic001G199400 Sobic003G356600--Sobic008G008100 Sobic003G356600--Sobic009G146700 Sobic003G070600 Sobic003G070600 Sobic003G356600--Sobic003G070600 Sobic003G356600--Sobic002G312200 Sobic010G014700 Sobic010G014700 Sobic003G356600--Sobic010G014700 Sobic005G009600--Sobic006G273600 Sobic005G009600--Sobic010G166300 Sobic005G009600--Sobic007G170100 Sobic005G009600--Sobic009G023900 Sobic005G009600--Sobic010G235300 Sobic005G009600--Sobic002G363300 Sobic005G009600--Sobic001G286700 Sobic005G009600--Sobic003G027100 Sobic005G009600--Sobic003G178500 Sobic002G312200--Sobic005G218000 Sobic002G312200--Sobic007G076100 Sobic002G312200--Sobic001G341700 Sobic004G318800 Sobic004G318800 Sobic002G312200--Sobic004G318800 Sobic006G089700 Sobic006G089700 Sobic002G312200--Sobic006G089700 Sobic005G118700 Sobic005G118700 Sobic002G312200--Sobic005G118700 Sobic006G092300 Sobic006G092300 Sobic002G312200--Sobic006G092300 Sobic002G312300 Sobic002G312300 Sobic002G312200--Sobic002G312300 Sobic002G312200--Sobic003G178500
Octagon: transcription factors


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