Gene annotation
Transcriptome id Sobic.004G102200.1
Synonym Sb04g008360, NIP1, NLM2, ATNLM2, 2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
aquaporin protein, putative, expressed
UniProt C5XYL0
Pfam PF00230
Panther DB PTHR19139 PTHR19139:SF144
NCBI CDD KOG0223; Aquaporin (major intrinsic protein family)
KEGG Orthology K09874; aquaporin NIP
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT4G18910 : NOD26-like intrinsic protein 1;2
RAP-DB (Rice) LOC_Os02g13870.1 : aquaporin protein, putative, expressed
MaizeGDB (Corn) Zm00025a043133 , Zm00025a033207 , Zm00025a020058
Brachypodium KQK07073 , KQJ94164
Barley HORVU7Hr1G043590.6 , HORVU7Hr1G043590.7 , HORVU7Hr1G043590.4 , HORVU7Hr1G043590.5 , HORVU7Hr1G043590.2 , HORVU7Hr1G043590.3 , HORVU7Hr1G043590.1 , HORVU7Hr1G043590.8 , HORVU7Hr1G043600.2 , HORVU7Hr1G043600.3 , HORVU7Hr1G043600.1 , HORVU7Hr1G043600.6 , HORVU7Hr1G043600.7 , HORVU7Hr1G043600.4 , HORVU7Hr1G043600.5
Wheat TraesCS7D02G217400 , TraesCS7A02G215700 , TraesCS7B02G122600 , TraesCS7B02G122600 , TraesCS6A02G307300
Populus -


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cDNA sequences
Sobic.004G102200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G298700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.004G274600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
3 Sobic.006G270500 GDSL-like lipase/acylhydrolase, putative, expressed -
4 Sobic.007G165800 SLG(Ortholog in rice:Feng et al. (2016))(PubMedID : 31659908)@transferase family protein, putative, expressed -
5 Sobic.001G199400 monocopper oxidase, putative, expressed -
6 Sobic.008G008100 kelch repeat-containing protein, putative, expressed -
7 Sobic.002G186800 strictosidine synthase, putative, expressed -
8 Sobic.009G175100 inactive receptor kinase At2g26730 precursor, putative, expressed -
9 Sobic.003G070600 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed -
10 Sobic.002G404300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
11 Sobic.001G434100 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
12 Sobic.004G211700 - -
13 Sobic.002G363300 - -
14 Sobic.003G027100 keratin, type I cytoskeletal 9, putative, expressed -
15 Sobic.010G014700 expressed protein -
16 Sobic.001G286700 homeobox and START domains containing protein, putative, expressed -
17 Sobic.003G338700 LTPL16 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
18 Sobic.003G113500 MFS18 protein precursor, putative, expressed -
19 Sobic.003G356600 ATROPGEF7/ROPGEF7, putative, expressed -
20 Sobic.010G078700 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein


Gene co-expression network
sample Sobic004G102200 Sobic004G102200 Sobic003G298700 Sobic003G298700 Sobic004G102200--Sobic003G298700 Sobic004G274600 Sobic004G274600 Sobic004G102200--Sobic004G274600 Sobic006G270500 Sobic006G270500 Sobic004G102200--Sobic006G270500 Sobic007G165800 Sobic007G165800 Sobic004G102200--Sobic007G165800 Sobic001G199400 Sobic001G199400 Sobic004G102200--Sobic001G199400 Sobic008G008100 Sobic008G008100 Sobic004G102200--Sobic008G008100 Sobic002G186800 Sobic002G186800 Sobic004G102200--Sobic002G186800 Sobic009G175100 Sobic009G175100 Sobic004G102200--Sobic009G175100 Sobic003G070600 Sobic003G070600 Sobic004G102200--Sobic003G070600 Sobic003G298700--Sobic004G102200 Sobic003G298700--Sobic004G274600 Sobic004G211700 Sobic004G211700 Sobic003G298700--Sobic004G211700 Sobic010G014700 Sobic010G014700 Sobic003G298700--Sobic010G014700 Sobic002G363300 Sobic002G363300 Sobic003G298700--Sobic002G363300 Sobic002G312300 Sobic002G312300 Sobic003G298700--Sobic002G312300 Sobic003G298700--Sobic006G270500 Sobic003G027100 Sobic003G027100 Sobic003G298700--Sobic003G027100 Sobic003G298700--Sobic008G008100 Sobic004G274600--Sobic007G165800 Sobic004G274600--Sobic004G211700 Sobic001G434100 Sobic001G434100 Sobic004G274600--Sobic001G434100 Sobic001G286700 Sobic001G286700 Sobic004G274600--Sobic001G286700 Sobic001G207600 Sobic001G207600 Sobic004G274600--Sobic001G207600 Sobic008G097700 Sobic008G097700 Sobic004G274600--Sobic008G097700 Sobic004G274600--Sobic008G008100 Sobic004G274600--Sobic003G027100 Sobic004G274600--Sobic003G298700 Sobic006G270500--Sobic004G102200 Sobic006G270500--Sobic003G298700 Sobic007G087800 Sobic007G087800 Sobic006G270500--Sobic007G087800 Sobic006G270500--Sobic009G175100 Sobic007G116800 Sobic007G116800 Sobic006G270500--Sobic007G116800 Sobic006G193100 Sobic006G193100 Sobic006G270500--Sobic006G193100 Sobic001G286400 Sobic001G286400 Sobic006G270500--Sobic001G286400 Sobic006G014400 Sobic006G014400 Sobic006G270500--Sobic006G014400 Sobic001G522300 Sobic001G522300 Sobic006G270500--Sobic001G522300 Sobic007G165800--Sobic004G274600 Sobic007G165800--Sobic001G434100 Sobic007G180200 Sobic007G180200 Sobic007G165800--Sobic007G180200 Sobic007G165800--Sobic001G286700 Sobic007G165800--Sobic003G027100 Sobic010G235300 Sobic010G235300 Sobic007G165800--Sobic010G235300 Sobic007G165800--Sobic001G199400 Sobic007G170100 Sobic007G170100 Sobic007G165800--Sobic007G170100 Sobic003G338700 Sobic003G338700 Sobic007G165800--Sobic003G338700 Sobic001G199400--Sobic010G014700 Sobic003G113500 Sobic003G113500 Sobic001G199400--Sobic003G113500 Sobic001G199400--Sobic003G027100 Sobic001G199400--Sobic003G338700 Sobic001G199400--Sobic007G165800 Sobic010G078700 Sobic010G078700 Sobic001G199400--Sobic010G078700 Sobic001G199400--Sobic003G070600 Sobic001G199400--Sobic007G180200 Sobic001G074000 Sobic001G074000 Sobic001G199400--Sobic001G074000 Sobic008G008100--Sobic004G274600 Sobic008G008100--Sobic002G363300 Sobic008G008100--Sobic004G211700 Sobic003G010700 Sobic003G010700 Sobic008G008100--Sobic003G010700 Sobic008G008100--Sobic001G286700 Sobic009G023900 Sobic009G023900 Sobic008G008100--Sobic009G023900 Sobic003G356600 Sobic003G356600 Sobic008G008100--Sobic003G356600 Sobic005G009600 Sobic005G009600 Sobic008G008100--Sobic005G009600 Sobic002G312200 Sobic002G312200 Sobic008G008100--Sobic002G312200 Sobic007G094200 Sobic007G094200 Sobic002G186800--Sobic007G094200 Sobic003G178500 Sobic003G178500 Sobic002G186800--Sobic003G178500 Sobic004G248100 Sobic004G248100 Sobic002G186800--Sobic004G248100 Sobic004G342000 Sobic004G342000 Sobic002G186800--Sobic004G342000 Sobic002G032500 Sobic002G032500 Sobic002G186800--Sobic002G032500 Sobic002G068400 Sobic002G068400 Sobic002G186800--Sobic002G068400 Sobic002G416400 Sobic002G416400 Sobic002G186800--Sobic002G416400 Sobic002G186800--Sobic004G211700 Sobic009G254500 Sobic009G254500 Sobic002G186800--Sobic009G254500 Sobic007G063100 Sobic007G063100 Sobic009G175100--Sobic007G063100 Sobic009G175100--Sobic006G193100 Sobic005G055600 Sobic005G055600 Sobic009G175100--Sobic005G055600 Sobic001G026800 Sobic001G026800 Sobic009G175100--Sobic001G026800 Sobic009G175100--Sobic007G116800 Sobic009G175100--Sobic004G102200 Sobic004G328300 Sobic004G328300 Sobic009G175100--Sobic004G328300 Sobic001G285200 Sobic001G285200 Sobic009G175100--Sobic001G285200 Sobic003G031700 Sobic003G031700 Sobic009G175100--Sobic003G031700 Sobic003G070600--Sobic001G074000 Sobic010G020600 Sobic010G020600 Sobic003G070600--Sobic010G020600 Sobic007G160300 Sobic007G160300 Sobic003G070600--Sobic007G160300 Sobic003G070600--Sobic001G199400 Sobic003G070600--Sobic003G113500 Sobic001G221900 Sobic001G221900 Sobic003G070600--Sobic001G221900 Sobic003G070600--Sobic004G274600 Sobic004G283800 Sobic004G283800 Sobic003G070600--Sobic004G283800 Sobic003G070600--Sobic004G248100
Octagon: transcription factors


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