Gene annotation
Transcriptome id Sobic.002G404300.2,Sobic.002G404300.1
Synonym Sb02g041870
Functional annotation seven in absentia protein family domain containing protein, expressed
UniProt C5X4R3 , A0A1W0W7U3
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF37
NCBI CDD KOG3002; Zn finger protein
KEGG Orthology K04506; E3 ubiquitin-protein ligase SIAH1
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT4G27880 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os07g46560.1 : seven in absentia protein family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049038 , Zm00025a002526
Brachypodium KQK21646 , PNT74620 , PNT74621 , KQK21647 , KQK21648
Barley HORVU2Hr1G022590.8 , HORVU2Hr1G022590.6 , HORVU2Hr1G022590.7 , HORVU2Hr1G022590.4 , HORVU2Hr1G022590.5 , HORVU2Hr1G022590.2 , HORVU2Hr1G022590.3 , HORVU2Hr1G022590.1
Wheat TraesCS4D02G164700 , TraesCS4A02G148400 , TraesCS4A02G148400 , TraesCS2B02G151100 , TraesCS2A02G129000 , TraesCS2D02G131700
Populus -


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cDNA sequences
Sobic.002G404300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G335900 cyclin, putative, expressed K18812: cyclin D6, plant
2 Sobic.002G032500 leucine-rich repeat family protein, putative, expressed -
3 Sobic.002G337600 expressed protein -
4 Sobic.002G186800 strictosidine synthase, putative, expressed -
5 Sobic.001G026800 polygalacturonase, putative, expressed -
6 Sobic.004G342000 WAX2, putative, expressed K15404: K15404, aldehyde decarbonylase
7 Sobic.004G211700 - -
8 Sobic.003G300400 expressed protein -
9 Sobic.004G274600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
10 Sobic.007G094200 expressed protein -
11 Sobic.007G115400 receptor-like protein kinase 5 precursor, putative, expressed -
12 Sobic.009G174100 receptor-like protein kinase 2 precursor, putative, expressed -
13 Sobic.004G102200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09874: aquaporin NIP
14 Sobic.003G338200 receptor-like protein kinase precursor, putative, expressed -
15 Sobic.009G175100 inactive receptor kinase At2g26730 precursor, putative, expressed -
16 Sobic.002G229700 expressed protein -
17 Sobic.001G046400 expressed protein -
18 Sobic.003G309400 OsSub4 - Putative Subtilisin homologue, expressed -
19 Sobic.003G031700 protein kinase family protein, putative, expressed -
20 Sobic.003G298700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G404300 Sobic002G404300 Sobic002G335900 Sobic002G335900 Sobic002G404300--Sobic002G335900 Sobic002G032500 Sobic002G032500 Sobic002G404300--Sobic002G032500 Sobic002G337600 Sobic002G337600 Sobic002G404300--Sobic002G337600 Sobic002G186800 Sobic002G186800 Sobic002G404300--Sobic002G186800 Sobic001G026800 Sobic001G026800 Sobic002G404300--Sobic001G026800 Sobic004G342000 Sobic004G342000 Sobic002G404300--Sobic004G342000 Sobic004G211700 Sobic004G211700 Sobic002G404300--Sobic004G211700 Sobic003G300400 Sobic003G300400 Sobic002G404300--Sobic003G300400 Sobic004G274600 Sobic004G274600 Sobic002G404300--Sobic004G274600 Sobic002G335900--Sobic002G337600 Sobic002G335900--Sobic002G404300 Sobic010G192500 Sobic010G192500 Sobic002G335900--Sobic010G192500 Sobic001G493900 Sobic001G493900 Sobic002G335900--Sobic001G493900 Sobic003G031700 Sobic003G031700 Sobic002G335900--Sobic003G031700 Sobic004G267600 Sobic004G267600 Sobic002G335900--Sobic004G267600 Sobic007G160300 Sobic007G160300 Sobic002G335900--Sobic007G160300 Sobic001G155700 Sobic001G155700 Sobic002G335900--Sobic001G155700 Sobic001G083500 Sobic001G083500 Sobic002G335900--Sobic001G083500 Sobic003G309400 Sobic003G309400 Sobic002G032500--Sobic003G309400 Sobic007G094200 Sobic007G094200 Sobic002G032500--Sobic007G094200 Sobic002G032500--Sobic003G300400 Sobic007G211200 Sobic007G211200 Sobic002G032500--Sobic007G211200 Sobic002G032500--Sobic004G211700 Sobic003G089300 Sobic003G089300 Sobic002G032500--Sobic003G089300 Sobic004G248100 Sobic004G248100 Sobic002G032500--Sobic004G248100 Sobic005G091000 Sobic005G091000 Sobic002G032500--Sobic005G091000 Sobic003G338200 Sobic003G338200 Sobic002G032500--Sobic003G338200 Sobic002G337600--Sobic010G192500 Sobic001G046400 Sobic001G046400 Sobic002G337600--Sobic001G046400 Sobic002G337600--Sobic002G335900 Sobic010G241100 Sobic010G241100 Sobic002G337600--Sobic010G241100 Sobic002G337600--Sobic007G211200 Sobic002G337600--Sobic002G032500 Sobic002G337600--Sobic003G089300 Sobic002G337600--Sobic004G211700 Sobic001G473500 Sobic001G473500 Sobic002G337600--Sobic001G473500 Sobic002G186800--Sobic007G094200 Sobic003G178500 Sobic003G178500 Sobic002G186800--Sobic003G178500 Sobic002G186800--Sobic004G248100 Sobic002G186800--Sobic004G342000 Sobic002G186800--Sobic002G032500 Sobic002G068400 Sobic002G068400 Sobic002G186800--Sobic002G068400 Sobic002G416400 Sobic002G416400 Sobic002G186800--Sobic002G416400 Sobic002G186800--Sobic004G211700 Sobic009G254500 Sobic009G254500 Sobic002G186800--Sobic009G254500 Sobic001G026800--Sobic002G404300 Sobic001G008300 Sobic001G008300 Sobic001G026800--Sobic001G008300 Sobic009G175100 Sobic009G175100 Sobic001G026800--Sobic009G175100 Sobic003G315700 Sobic003G315700 Sobic001G026800--Sobic003G315700 Sobic006G193100 Sobic006G193100 Sobic001G026800--Sobic006G193100 Sobic003G409600 Sobic003G409600 Sobic001G026800--Sobic003G409600 Sobic002G074000 Sobic002G074000 Sobic001G026800--Sobic002G074000 Sobic003G336900 Sobic003G336900 Sobic001G026800--Sobic003G336900 Sobic001G026800--Sobic003G031700 Sobic005G218000 Sobic005G218000 Sobic004G342000--Sobic005G218000 Sobic001G341700 Sobic001G341700 Sobic004G342000--Sobic001G341700 Sobic004G342000--Sobic004G211700 Sobic002G029700 Sobic002G029700 Sobic004G342000--Sobic002G029700 Sobic007G076100 Sobic007G076100 Sobic004G342000--Sobic007G076100 Sobic008G012600 Sobic008G012600 Sobic004G342000--Sobic008G012600 Sobic004G342000--Sobic002G416400 Sobic006G151800 Sobic006G151800 Sobic004G342000--Sobic006G151800 Sobic006G089700 Sobic006G089700 Sobic004G342000--Sobic006G089700 Sobic004G211700--Sobic004G342000 Sobic009G023900 Sobic009G023900 Sobic004G211700--Sobic009G023900 Sobic004G211700--Sobic003G178500 Sobic001G286700 Sobic001G286700 Sobic004G211700--Sobic001G286700 Sobic003G027100 Sobic003G027100 Sobic004G211700--Sobic003G027100 Sobic004G211700--Sobic005G218000 Sobic004G211700--Sobic001G341700 Sobic002G312200 Sobic002G312200 Sobic004G211700--Sobic002G312200 Sobic010G166300 Sobic010G166300 Sobic004G211700--Sobic010G166300 Sobic003G300400--Sobic003G309400 Sobic003G300400--Sobic002G032500 Sobic002G419200 Sobic002G419200 Sobic003G300400--Sobic002G419200 Sobic003G300400--Sobic009G254500 Sobic003G300400--Sobic007G094200 Sobic003G339600 Sobic003G339600 Sobic003G300400--Sobic003G339600 Sobic002G229700 Sobic002G229700 Sobic003G300400--Sobic002G229700 Sobic008G154700 Sobic008G154700 Sobic003G300400--Sobic008G154700 Sobic009G141300 Sobic009G141300 Sobic003G300400--Sobic009G141300 Sobic007G165800 Sobic007G165800 Sobic004G274600--Sobic007G165800 Sobic004G274600--Sobic004G211700 Sobic001G434100 Sobic001G434100 Sobic004G274600--Sobic001G434100 Sobic004G274600--Sobic001G286700 Sobic001G207600 Sobic001G207600 Sobic004G274600--Sobic001G207600 Sobic008G097700 Sobic008G097700 Sobic004G274600--Sobic008G097700 Sobic008G008100 Sobic008G008100 Sobic004G274600--Sobic008G008100 Sobic004G274600--Sobic003G027100 Sobic003G298700 Sobic003G298700 Sobic004G274600--Sobic003G298700
Octagon: transcription factors


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