Gene annotation
Transcriptome id Sobic.003G239600.1,Sobic.003G239600.2
Synonym Sb03g029690
Functional annotation chloroplast unusual positioning protein, putative, expressed
UniProt A0A1W0VYQ9 , A0A1B6Q539
Pfam -
Panther DB PTHR31342 PTHR31342:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G18570 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g46340.1,LOC_Os05g49820.1 : chloroplast unusual positioning protein, putative, expressed
MaizeGDB (Corn) Zm00025a023427 , Zm00025a028233 , Zm00025a044651
Brachypodium KQK08986 , KQK04756 , PNT70674
Barley HORVU1Hr1G009000.1 , HORVU1Hr1G090530.1 , HORVU3Hr1G058740.16 , HORVU3Hr1G058740.15 , HORVU3Hr1G058740.14 , HORVU3Hr1G058740.13 , HORVU3Hr1G058740.12 , HORVU3Hr1G058740.11 , HORVU3Hr1G058740.10 , HORVU1Hr1G090530.2 , HORVU1Hr1G090530.3 , HORVU1Hr1G090530.6 , HORVU1Hr1G090530.7 , HORVU1Hr1G090530.4 , HORVU1Hr1G090530.5 , HORVU1Hr1G090530.8 , HORVU1Hr1G090530.9 , HORVU3Hr1G058740.8 , HORVU3Hr1G058740.6 , HORVU3Hr1G058740.5 , HORVU3Hr1G058740.4 , HORVU3Hr1G058740.2 , HORVU3Hr1G058740.1 , HORVU4Hr1G024540.1 , HORVU1Hr1G090530.10 , HORVU1Hr1G090530.12 , HORVU1Hr1G090530.13 , HORVU1Hr1G090530.14 , HORVU1Hr1G090530.15
Wheat TraesCS3B02G264100 , TraesCS1D02G419900 , TraesCS1D02G419900 , TraesCS1B02G442500 , TraesCS3D02G235300 , TraesCS3A02G235800 , TraesCS1A02G412100
Populus -


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cDNA sequences
Sobic.003G239600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G078700 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
2 Sobic.010G246500 glycosyl hydrolases family 16, putative, expressed -
3 Sobic.003G298700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.009G070500 uncharacterized protein At4g06744 precursor, putative, expressed -
5 Sobic.007G165800 SLG(Ortholog in rice:Feng et al. (2016))(PubMedID : 31659908)@transferase family protein, putative, expressed -
6 Sobic.001G199400 monocopper oxidase, putative, expressed -
7 Sobic.006G058000 OsSCP24 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
8 Sobic.006G228100 glycosyl hydrolases family 16 protein, protein, expressed K08235: xyloglucan:xyloglucosyl transferase
9 Sobic.010G077000 "Upregulated in leave and stem in response to drouht stress, not expredded in roots"(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed -
10 Sobic.005G016300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.001G299600 GATA zinc finger domain containing protein, expressed -
12 Sobic.003G027100 keratin, type I cytoskeletal 9, putative, expressed -
13 Sobic.003G338700 LTPL16 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
14 Sobic.001G488900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
15 Sobic.004G274600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
16 Sobic.001G286700 homeobox and START domains containing protein, putative, expressed -
17 Sobic.003G113500 MFS18 protein precursor, putative, expressed -
18 Sobic.001G434100 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
19 Sobic.010G235300 acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
20 Sobic.008G137500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic003G239600 Sobic003G239600 Sobic010G078700 Sobic010G078700 Sobic003G239600--Sobic010G078700 Sobic010G246500 Sobic010G246500 Sobic003G239600--Sobic010G246500 Sobic003G298700 Sobic003G298700 Sobic003G239600--Sobic003G298700 Sobic009G070500 Sobic009G070500 Sobic003G239600--Sobic009G070500 Sobic007G165800 Sobic007G165800 Sobic003G239600--Sobic007G165800 Sobic001G199400 Sobic001G199400 Sobic003G239600--Sobic001G199400 Sobic006G058000 Sobic006G058000 Sobic003G239600--Sobic006G058000 Sobic006G228100 Sobic006G228100 Sobic003G239600--Sobic006G228100 Sobic010G077000 Sobic010G077000 Sobic003G239600--Sobic010G077000 Sobic003G113500 Sobic003G113500 Sobic010G078700--Sobic003G113500 Sobic010G078700--Sobic001G199400 Sobic010G078700--Sobic007G165800 Sobic010G078700--Sobic006G058000 Sobic010G020600 Sobic010G020600 Sobic010G078700--Sobic010G020600 Sobic001G221900 Sobic001G221900 Sobic010G078700--Sobic001G221900 Sobic004G248100 Sobic004G248100 Sobic010G078700--Sobic004G248100 Sobic004G274600 Sobic004G274600 Sobic010G078700--Sobic004G274600 Sobic001G470200 Sobic001G470200 Sobic010G078700--Sobic001G470200 Sobic010G246500--Sobic009G070500 Sobic010G246500--Sobic003G239600 Sobic010G246500--Sobic006G228100 Sobic002G312300 Sobic002G312300 Sobic010G246500--Sobic002G312300 Sobic010G246500--Sobic003G298700 Sobic008G137500 Sobic008G137500 Sobic010G246500--Sobic008G137500 Sobic010G246500--Sobic010G078700 Sobic002G194500 Sobic002G194500 Sobic010G246500--Sobic002G194500 Sobic002G202500 Sobic002G202500 Sobic010G246500--Sobic002G202500 Sobic004G102200 Sobic004G102200 Sobic003G298700--Sobic004G102200 Sobic003G298700--Sobic004G274600 Sobic004G211700 Sobic004G211700 Sobic003G298700--Sobic004G211700 Sobic010G014700 Sobic010G014700 Sobic003G298700--Sobic010G014700 Sobic002G363300 Sobic002G363300 Sobic003G298700--Sobic002G363300 Sobic003G298700--Sobic002G312300 Sobic006G270500 Sobic006G270500 Sobic003G298700--Sobic006G270500 Sobic003G027100 Sobic003G027100 Sobic003G298700--Sobic003G027100 Sobic008G008100 Sobic008G008100 Sobic003G298700--Sobic008G008100 Sobic009G070500--Sobic010G246500 Sobic009G070500--Sobic010G077000 Sobic003G338700 Sobic003G338700 Sobic009G070500--Sobic003G338700 Sobic003G325400 Sobic003G325400 Sobic009G070500--Sobic003G325400 Sobic009G146700 Sobic009G146700 Sobic009G070500--Sobic009G146700 Sobic003G373900 Sobic003G373900 Sobic009G070500--Sobic003G373900 Sobic010G070900 Sobic010G070900 Sobic009G070500--Sobic010G070900 Sobic009G070500--Sobic003G239600 Sobic005G199700 Sobic005G199700 Sobic009G070500--Sobic005G199700 Sobic007G165800--Sobic004G274600 Sobic001G434100 Sobic001G434100 Sobic007G165800--Sobic001G434100 Sobic007G180200 Sobic007G180200 Sobic007G165800--Sobic007G180200 Sobic001G286700 Sobic001G286700 Sobic007G165800--Sobic001G286700 Sobic007G165800--Sobic003G027100 Sobic010G235300 Sobic010G235300 Sobic007G165800--Sobic010G235300 Sobic007G165800--Sobic001G199400 Sobic007G170100 Sobic007G170100 Sobic007G165800--Sobic007G170100 Sobic007G165800--Sobic003G338700 Sobic001G199400--Sobic010G014700 Sobic001G199400--Sobic003G113500 Sobic001G199400--Sobic003G027100 Sobic001G199400--Sobic003G338700 Sobic001G199400--Sobic007G165800 Sobic001G199400--Sobic010G078700 Sobic003G070600 Sobic003G070600 Sobic001G199400--Sobic003G070600 Sobic001G199400--Sobic007G180200 Sobic001G074000 Sobic001G074000 Sobic001G199400--Sobic001G074000 Sobic007G160300 Sobic007G160300 Sobic006G058000--Sobic007G160300 Sobic006G058000--Sobic010G020600 Sobic006G058000--Sobic010G078700 Sobic010G192500 Sobic010G192500 Sobic006G058000--Sobic010G192500 Sobic004G317200 Sobic004G317200 Sobic006G058000--Sobic004G317200 Sobic003G089300 Sobic003G089300 Sobic006G058000--Sobic003G089300 Sobic001G390400 Sobic001G390400 Sobic006G058000--Sobic001G390400 Sobic006G058000--Sobic001G470200 Sobic008G097700 Sobic008G097700 Sobic006G058000--Sobic008G097700 Sobic001G530300 Sobic001G530300 Sobic006G228100--Sobic001G530300 Sobic004G225400 Sobic004G225400 Sobic006G228100--Sobic004G225400 Sobic006G271100 Sobic006G271100 Sobic006G228100--Sobic006G271100 Sobic009G070000 Sobic009G070000 Sobic006G228100--Sobic009G070000 Sobic005G111600 Sobic005G111600 Sobic006G228100--Sobic005G111600 Sobic002G004500 Sobic002G004500 Sobic006G228100--Sobic002G004500 Sobic006G228100--Sobic010G246500 Sobic001G399400 Sobic001G399400 Sobic006G228100--Sobic001G399400 Sobic006G228100--Sobic008G137500 Sobic010G077000--Sobic003G338700 Sobic010G014500 Sobic010G014500 Sobic010G077000--Sobic010G014500 Sobic003G019900 Sobic003G019900 Sobic010G077000--Sobic003G019900 Sobic004G003700 Sobic004G003700 Sobic010G077000--Sobic004G003700 Sobic006G163300 Sobic006G163300 Sobic010G077000--Sobic006G163300 Sobic001G379900 Sobic001G379900 Sobic010G077000--Sobic001G379900 Sobic001G493900 Sobic001G493900 Sobic010G077000--Sobic001G493900 Sobic003G010700 Sobic003G010700 Sobic010G077000--Sobic003G010700 Sobic007G147200 Sobic007G147200 Sobic010G077000--Sobic007G147200
Octagon: transcription factors


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