Gene annotation
Transcriptome id Sobic.010G246500.1
Synonym XTH24, SEN4, MERI-5, MERI5B, Sb10g028560
Functional annotation glycosyl hydrolases family 16, putative, expressed
UniProt C5Z8T3
Pfam PF06955 PF00722
Panther DB PTHR31062 PTHR31062:SF50
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016762; xyloglucan:xyloglucosyl transferase activity GO:0006073cellular glucan metabolic process GO:0005618cell wall GO:0005975carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G57560 : Xyloglucan endotransglucosylase/hydrolase family protein
RAP-DB (Rice) LOC_Os06g48170.1 : glycosyl hydrolases family 16, putative, expressed
MaizeGDB (Corn) Zm00025a018309 , Zm00025a018308 , Zm00025a019784 , Zm00025a034364 , Zm00025a050765 , Zm00025a056955 , Zm00025a009908
Brachypodium KQK17338 , KQJ94399 , KQK17341 , KQK17340
Barley HORVU2Hr1G014530.1 , HORVU2Hr1G111060.2 , HORVU2Hr1G111060.1 , HORVU2Hr1G014530.2 , HORVU7Hr1G081740.1 , HORVU7Hr1G098280.2 , HORVU7Hr1G098280.1 , HORVU2Hr1G014530.3
Wheat TraesCS2A02G498200 , TraesCS7D02G418600 , TraesCS7D02G418600 , TraesCS7D02G418600 , TraesCS2A02G498400 , TraesCS7B02G326900 , TraesCS7B02G327200 , TraesCS7D02G419300 , TraesCS2D02G498400 , TraesCS2B02G526500 , TraesCS7B02G327400 , TraesCS7D02G339400 , TraesCS2B02G454800 , TraesCS7A02G426900 , TraesCS2D02G498600 , TraesCS7B02G242900 , TraesCS7A02G426100 , TraesCS7D02G418700 , TraesCS7A02G427000 , TraesCS2B02G104700 , TraesCS7D02G419200 , TraesCS7A02G427100 , TraesCS7D02G419400 , TraesCS7A02G426600 , TraesCS7A02G426700 , TraesCS7A02G427300 , TraesCS2D02G498700 , TraesCS2A02G498300 , TraesCS2D02G431800 , TraesCS7A02G331200 , TraesCS7B02G327000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G070500 uncharacterized protein At4g06744 precursor, putative, expressed -
2 Sobic.003G239600 chloroplast unusual positioning protein, putative, expressed -
3 Sobic.006G228100 glycosyl hydrolases family 16 protein, protein, expressed K08235: xyloglucan:xyloglucosyl transferase
4 Sobic.002G312300 SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -
5 Sobic.003G298700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.008G137500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.010G078700 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
8 Sobic.002G194500 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
9 Sobic.002G202500 spotted leaf 11, putative, expressed -
10 Sobic.010G191100 helix-loop-helix DNA-binding, putative, expressed -
11 Sobic.001G530300 HOTHEAD precursor, putative, expressed -
12 Sobic.001G247700 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
13 Sobic.004G313900 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
14 Sobic.010G136500 expressed protein -
15 Sobic.001G230400 pectate lyase precursor, putative, expressed K01728: pectate lyase
16 Sobic.003G027100 keratin, type I cytoskeletal 9, putative, expressed -
17 Sobic.003G113500 MFS18 protein precursor, putative, expressed -
18 Sobic.004G225400 PCF-like (ClassI) Subclade 2 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
19 Sobic.006G163600 Trihelix Family(PubMedID : 24864043)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
20 Sobic.004G155900 heavy metal-associated domain containing protein, expressed -


Gene co-expression network
sample Sobic010G246500 Sobic010G246500 Sobic009G070500 Sobic009G070500 Sobic010G246500--Sobic009G070500 Sobic003G239600 Sobic003G239600 Sobic010G246500--Sobic003G239600 Sobic006G228100 Sobic006G228100 Sobic010G246500--Sobic006G228100 Sobic002G312300 Sobic002G312300 Sobic010G246500--Sobic002G312300 Sobic003G298700 Sobic003G298700 Sobic010G246500--Sobic003G298700 Sobic008G137500 Sobic008G137500 Sobic010G246500--Sobic008G137500 Sobic010G078700 Sobic010G078700 Sobic010G246500--Sobic010G078700 Sobic002G194500 Sobic002G194500 Sobic010G246500--Sobic002G194500 Sobic002G202500 Sobic002G202500 Sobic010G246500--Sobic002G202500 Sobic009G070500--Sobic010G246500 Sobic010G077000 Sobic010G077000 Sobic009G070500--Sobic010G077000 Sobic003G338700 Sobic003G338700 Sobic009G070500--Sobic003G338700 Sobic003G325400 Sobic003G325400 Sobic009G070500--Sobic003G325400 Sobic009G146700 Sobic009G146700 Sobic009G070500--Sobic009G146700 Sobic003G373900 Sobic003G373900 Sobic009G070500--Sobic003G373900 Sobic010G070900 Sobic010G070900 Sobic009G070500--Sobic010G070900 Sobic009G070500--Sobic003G239600 Sobic005G199700 Sobic005G199700 Sobic009G070500--Sobic005G199700 Sobic003G239600--Sobic010G078700 Sobic003G239600--Sobic010G246500 Sobic003G239600--Sobic003G298700 Sobic003G239600--Sobic009G070500 Sobic007G165800 Sobic007G165800 Sobic003G239600--Sobic007G165800 Sobic001G199400 Sobic001G199400 Sobic003G239600--Sobic001G199400 Sobic006G058000 Sobic006G058000 Sobic003G239600--Sobic006G058000 Sobic003G239600--Sobic006G228100 Sobic003G239600--Sobic010G077000 Sobic001G530300 Sobic001G530300 Sobic006G228100--Sobic001G530300 Sobic004G225400 Sobic004G225400 Sobic006G228100--Sobic004G225400 Sobic006G271100 Sobic006G271100 Sobic006G228100--Sobic006G271100 Sobic009G070000 Sobic009G070000 Sobic006G228100--Sobic009G070000 Sobic005G111600 Sobic005G111600 Sobic006G228100--Sobic005G111600 Sobic002G004500 Sobic002G004500 Sobic006G228100--Sobic002G004500 Sobic006G228100--Sobic010G246500 Sobic001G399400 Sobic001G399400 Sobic006G228100--Sobic001G399400 Sobic006G228100--Sobic008G137500 Sobic002G312200 Sobic002G312200 Sobic002G312300--Sobic002G312200 Sobic010G166300 Sobic010G166300 Sobic002G312300--Sobic010G166300 Sobic007G076100 Sobic007G076100 Sobic002G312300--Sobic007G076100 Sobic003G178500 Sobic003G178500 Sobic002G312300--Sobic003G178500 Sobic005G218000 Sobic005G218000 Sobic002G312300--Sobic005G218000 Sobic003G027100 Sobic003G027100 Sobic002G312300--Sobic003G027100 Sobic009G023900 Sobic009G023900 Sobic002G312300--Sobic009G023900 Sobic001G341700 Sobic001G341700 Sobic002G312300--Sobic001G341700 Sobic004G318800 Sobic004G318800 Sobic002G312300--Sobic004G318800 Sobic004G102200 Sobic004G102200 Sobic003G298700--Sobic004G102200 Sobic004G274600 Sobic004G274600 Sobic003G298700--Sobic004G274600 Sobic004G211700 Sobic004G211700 Sobic003G298700--Sobic004G211700 Sobic010G014700 Sobic010G014700 Sobic003G298700--Sobic010G014700 Sobic002G363300 Sobic002G363300 Sobic003G298700--Sobic002G363300 Sobic003G298700--Sobic002G312300 Sobic006G270500 Sobic006G270500 Sobic003G298700--Sobic006G270500 Sobic003G298700--Sobic003G027100 Sobic008G008100 Sobic008G008100 Sobic003G298700--Sobic008G008100 Sobic010G191100 Sobic010G191100 Sobic008G137500--Sobic010G191100 Sobic008G137500--Sobic005G111600 Sobic002G408500 Sobic002G408500 Sobic008G137500--Sobic002G408500 Sobic009G229100 Sobic009G229100 Sobic008G137500--Sobic009G229100 Sobic008G137500--Sobic006G228100 Sobic008G137500--Sobic009G070000 Sobic004G155900 Sobic004G155900 Sobic008G137500--Sobic004G155900 Sobic008G137500--Sobic010G246500 Sobic002G154300 Sobic002G154300 Sobic008G137500--Sobic002G154300 Sobic003G113500 Sobic003G113500 Sobic010G078700--Sobic003G113500 Sobic010G078700--Sobic001G199400 Sobic010G078700--Sobic007G165800 Sobic010G078700--Sobic006G058000 Sobic010G020600 Sobic010G020600 Sobic010G078700--Sobic010G020600 Sobic001G221900 Sobic001G221900 Sobic010G078700--Sobic001G221900 Sobic004G248100 Sobic004G248100 Sobic010G078700--Sobic004G248100 Sobic010G078700--Sobic004G274600 Sobic001G470200 Sobic001G470200 Sobic010G078700--Sobic001G470200 Sobic001G046400 Sobic001G046400 Sobic002G194500--Sobic001G046400 Sobic004G342000 Sobic004G342000 Sobic002G194500--Sobic004G342000 Sobic001G119200 Sobic001G119200 Sobic002G194500--Sobic001G119200 Sobic007G211200 Sobic007G211200 Sobic002G194500--Sobic007G211200 Sobic007G115400 Sobic007G115400 Sobic002G194500--Sobic007G115400 Sobic002G194500--Sobic003G113500 Sobic002G011000 Sobic002G011000 Sobic002G194500--Sobic002G011000 Sobic010G077700 Sobic010G077700 Sobic002G194500--Sobic010G077700 Sobic002G186800 Sobic002G186800 Sobic002G194500--Sobic002G186800 Sobic007G162000 Sobic007G162000 Sobic002G202500--Sobic007G162000 Sobic004G336700 Sobic004G336700 Sobic002G202500--Sobic004G336700 Sobic001G247700 Sobic001G247700 Sobic002G202500--Sobic001G247700 Sobic009G195600 Sobic009G195600 Sobic002G202500--Sobic009G195600 Sobic001G265300 Sobic001G265300 Sobic002G202500--Sobic001G265300 Sobic004G113900 Sobic004G113900 Sobic002G202500--Sobic004G113900 Sobic007G019600 Sobic007G019600 Sobic002G202500--Sobic007G019600 Sobic010G209800 Sobic010G209800 Sobic002G202500--Sobic010G209800 Sobic004G283800 Sobic004G283800 Sobic002G202500--Sobic004G283800
Octagon: transcription factors


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