Gene annotation
Transcriptome id Sobic.001G230400.2,Sobic.001G230400.1
Synonym Sb01g020180
Functional annotation pectate lyase precursor, putative, expressed
UniProt A0A1Z5S6X8 , A0A1B6QKH6
Pfam PF00544
Panther DB PTHR31683 PTHR31683:SF11
NCBI CDD -
KEGG Orthology K01728; pectate lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G53190 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os10g31910.1 : pectate lyase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a006723 , Zm00025a050050
Brachypodium KQJ96954
Barley HORVU1Hr1G038220.12 , HORVU1Hr1G038220.10 , HORVU1Hr1G038220.11 , HORVU1Hr1G038220.4 , HORVU1Hr1G038220.5 , HORVU1Hr1G038220.6 , HORVU1Hr1G038220.7 , HORVU1Hr1G038220.1 , HORVU1Hr1G038220.3 , HORVU1Hr1G038220.8 , HORVU1Hr1G038220.9
Wheat TraesCS1A02G143600 , TraesCS1D02G142400 , TraesCS1B02G161000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G247700 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
2 Sobic.010G246500 glycosyl hydrolases family 16, putative, expressed -
3 Sobic.009G254400 polygalacturonase inhibitor 1 precursor, putative, expressed -
4 Sobic.002G194500 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
5 Sobic.001G263500 glycosyl hydrolases family 17, putative, expressed -
6 Sobic.003G406500 antifreeze glycoprotein, putative, expressed -
7 Sobic.003G432000 expressed protein -
8 Sobic.004G327150 - -
9 Sobic.006G108100 LTPL81 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
10 Sobic.007G181100 MATE efflux family protein("PubMedID : 26759170,PubMedID : 24597475")@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.004G115600 HMG1/2, putative, expressed K09273: upstream-binding transcription factor
12 Sobic.003G083500 inactive receptor kinase At2g26730 precursor, putative, expressed -
13 Sobic.002G202500 spotted leaf 11, putative, expressed -
14 Sobic.005G131900 inducer of CBF expression 1, putative, expressed -
15 Sobic.007G038000 receptor-like protein kinase 5 precursor, putative, expressed -
16 Sobic.007G162000 carboxyl-terminal peptidase, putative, expressed -
17 Sobic.003G300100 bZIP transcription factor domain containing protein, expressed -
18 Sobic.001G080600 expressed protein -
19 Sobic.010G136500 expressed protein -
20 Sobic.003G325400 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I


Gene co-expression network
sample Sobic001G230400 Sobic001G230400 Sobic001G247700 Sobic001G247700 Sobic001G230400--Sobic001G247700 Sobic010G246500 Sobic010G246500 Sobic001G230400--Sobic010G246500 Sobic009G254400 Sobic009G254400 Sobic001G230400--Sobic009G254400 Sobic002G194500 Sobic002G194500 Sobic001G230400--Sobic002G194500 Sobic001G263500 Sobic001G263500 Sobic001G230400--Sobic001G263500 Sobic003G406500 Sobic003G406500 Sobic001G230400--Sobic003G406500 Sobic003G432000 Sobic003G432000 Sobic001G230400--Sobic003G432000 Sobic004G327150 Sobic004G327150 Sobic001G230400--Sobic004G327150 Sobic006G108100 Sobic006G108100 Sobic001G230400--Sobic006G108100 Sobic007G181100 Sobic007G181100 Sobic001G247700--Sobic007G181100 Sobic003G083500 Sobic003G083500 Sobic001G247700--Sobic003G083500 Sobic001G247700--Sobic006G108100 Sobic001G068800 Sobic001G068800 Sobic001G247700--Sobic001G068800 Sobic002G260600 Sobic002G260600 Sobic001G247700--Sobic002G260600 Sobic003G113500 Sobic003G113500 Sobic001G247700--Sobic003G113500 Sobic007G211200 Sobic007G211200 Sobic001G247700--Sobic007G211200 Sobic004G357000 Sobic004G357000 Sobic001G247700--Sobic004G357000 Sobic005G129600 Sobic005G129600 Sobic001G247700--Sobic005G129600 Sobic009G070500 Sobic009G070500 Sobic010G246500--Sobic009G070500 Sobic003G239600 Sobic003G239600 Sobic010G246500--Sobic003G239600 Sobic006G228100 Sobic006G228100 Sobic010G246500--Sobic006G228100 Sobic002G312300 Sobic002G312300 Sobic010G246500--Sobic002G312300 Sobic003G298700 Sobic003G298700 Sobic010G246500--Sobic003G298700 Sobic008G137500 Sobic008G137500 Sobic010G246500--Sobic008G137500 Sobic010G078700 Sobic010G078700 Sobic010G246500--Sobic010G078700 Sobic010G246500--Sobic002G194500 Sobic002G202500 Sobic002G202500 Sobic010G246500--Sobic002G202500 Sobic009G254400--Sobic001G263500 Sobic009G254400--Sobic003G406500 Sobic008G163800 Sobic008G163800 Sobic009G254400--Sobic008G163800 Sobic002G330800 Sobic002G330800 Sobic009G254400--Sobic002G330800 Sobic001G331100 Sobic001G331100 Sobic009G254400--Sobic001G331100 Sobic010G179000 Sobic010G179000 Sobic009G254400--Sobic010G179000 Sobic006G108000 Sobic006G108000 Sobic009G254400--Sobic006G108000 Sobic006G278400 Sobic006G278400 Sobic009G254400--Sobic006G278400 Sobic006G079100 Sobic006G079100 Sobic009G254400--Sobic006G079100 Sobic001G046400 Sobic001G046400 Sobic002G194500--Sobic001G046400 Sobic004G342000 Sobic004G342000 Sobic002G194500--Sobic004G342000 Sobic001G119200 Sobic001G119200 Sobic002G194500--Sobic001G119200 Sobic002G194500--Sobic007G211200 Sobic007G115400 Sobic007G115400 Sobic002G194500--Sobic007G115400 Sobic002G194500--Sobic003G113500 Sobic002G011000 Sobic002G011000 Sobic002G194500--Sobic002G011000 Sobic010G077700 Sobic010G077700 Sobic002G194500--Sobic010G077700 Sobic002G186800 Sobic002G186800 Sobic002G194500--Sobic002G186800 Sobic001G263500--Sobic009G254400 Sobic001G263500--Sobic008G163800 Sobic001G263500--Sobic010G179000 Sobic001G263500--Sobic006G079100 Sobic010G161300 Sobic010G161300 Sobic001G263500--Sobic010G161300 Sobic001G263500--Sobic003G406500 Sobic008G031600 Sobic008G031600 Sobic001G263500--Sobic008G031600 Sobic001G263500--Sobic006G278400 Sobic001G263500--Sobic001G331100 Sobic003G406500--Sobic009G254400 Sobic007G153300 Sobic007G153300 Sobic003G406500--Sobic007G153300 Sobic003G406500--Sobic006G108000 Sobic003G406500--Sobic008G163800 Sobic003G006500 Sobic003G006500 Sobic003G406500--Sobic003G006500 Sobic003G406500--Sobic001G263500 Sobic003G359200 Sobic003G359200 Sobic003G406500--Sobic003G359200 Sobic003G406500--Sobic001G331100 Sobic010G209800 Sobic010G209800 Sobic003G406500--Sobic010G209800 Sobic004G113900 Sobic004G113900 Sobic003G432000--Sobic004G113900 Sobic003G432000--Sobic005G129600 Sobic003G338200 Sobic003G338200 Sobic003G432000--Sobic003G338200 Sobic001G345200 Sobic001G345200 Sobic003G432000--Sobic001G345200 Sobic010G234900 Sobic010G234900 Sobic003G432000--Sobic010G234900 Sobic003G432000--Sobic007G211200 Sobic003G432000--Sobic004G357000 Sobic003G432000--Sobic001G247700 Sobic001G267800 Sobic001G267800 Sobic003G432000--Sobic001G267800 Sobic004G327150--Sobic010G246500 Sobic004G327150--Sobic001G247700 Sobic004G327150--Sobic001G230400 Sobic004G327150--Sobic003G406500 Sobic004G327150--Sobic002G202500 Sobic004G115600 Sobic004G115600 Sobic004G327150--Sobic004G115600 Sobic004G327150--Sobic002G194500 Sobic001G080600 Sobic001G080600 Sobic004G327150--Sobic001G080600 Sobic004G327150--Sobic003G432000 Sobic006G108100--Sobic001G068800 Sobic006G108100--Sobic007G181100 Sobic006G108100--Sobic001G247700 Sobic002G115700 Sobic002G115700 Sobic006G108100--Sobic002G115700 Sobic006G108100--Sobic003G083500 Sobic002G425600 Sobic002G425600 Sobic006G108100--Sobic002G425600 Sobic001G438400 Sobic001G438400 Sobic006G108100--Sobic001G438400 Sobic004G202800 Sobic004G202800 Sobic006G108100--Sobic004G202800 Sobic006G006800 Sobic006G006800 Sobic006G108100--Sobic006G006800
Octagon: transcription factors


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