Gene annotation
Transcriptome id Sobic.001G263500.1
Synonym Sb01g025310
Functional annotation glycosyl hydrolases family 17, putative, expressed
UniProt A0A1B6QL85
Pfam PF00332
Panther DB PTHR32227 PTHR32227:SF99
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT1G32860 : Glycosyl hydrolase superfamily protein
RAP-DB (Rice) LOC_Os10g07290.1 : glycosyl hydrolases family 17, putative, expressed
MaizeGDB (Corn) Zm00025a003839 , Zm00025a026758
Brachypodium KQJ96070 , KQK19723 , KQK18106
Barley HORVU1Hr1G011260.1 , HORVU1Hr1G011210.1 , HORVU1Hr1G011260.2 , HORVU1Hr1G011100.1 , HORVU1Hr1G011100.2 , HORVU0Hr1G031910.1 , HORVU3Hr1G105620.1 , HORVU3Hr1G105620.3 , HORVU3Hr1G105620.2 , HORVU3Hr1G105620.5 , HORVU3Hr1G105620.4 , HORVU3Hr1G105620.6 , HORVU3Hr1G084170.1 , HORVU3Hr1G084170.3 , HORVU3Hr1G084170.2 , HORVU3Hr1G084170.5 , HORVU3Hr1G084170.4 , HORVU1Hr1G010910.1 , HORVU1Hr1G010910.2 , HORVU1Hr1G010910.3
Wheat TraesCS1D02G056500 , TraesCS1B02G072500 , TraesCS3D02G366700 , TraesCS3D02G366700 , TraesCS3A02G374000 , TraesCS3B02G406200 , TraesCS3A02G374000 , TraesCS3B02G406200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G254400 polygalacturonase inhibitor 1 precursor, putative, expressed -
2 Sobic.008G163800 expressed protein -
3 Sobic.010G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
4 Sobic.006G079100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
5 Sobic.010G161300 receptor-like kinase, putative, expressed -
6 Sobic.003G406500 antifreeze glycoprotein, putative, expressed -
7 Sobic.008G031600 expressed protein -
8 Sobic.006G278400 ZOS4-14 - C2H2 zinc finger protein, expressed -
9 Sobic.001G331100 expressed protein -
10 Sobic.001G148600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
11 Sobic.001G460700 expressed protein -
12 Sobic.002G330800 BTBN15 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
13 Sobic.005G226900 expressed protein -
14 Sobic.004G297800 transferase family protein, putative, expressed -
15 Sobic.010G014200 expressed protein -
16 Sobic.007G139000 ZF-HD protein dimerisation region containing protein, expressed -
17 Sobic.006G280300 anthranilate phosphoribosyltransferase, putative, expressed -
18 Sobic.003G006500 WD domain, G-beta repeat domain containing protein, expressed -
19 Sobic.009G136600 peptide transporter PTR2, putative, expressed -
20 Sobic.008G163600 expressed protein -


Gene co-expression network
sample Sobic001G263500 Sobic001G263500 Sobic009G254400 Sobic009G254400 Sobic001G263500--Sobic009G254400 Sobic008G163800 Sobic008G163800 Sobic001G263500--Sobic008G163800 Sobic010G179000 Sobic010G179000 Sobic001G263500--Sobic010G179000 Sobic006G079100 Sobic006G079100 Sobic001G263500--Sobic006G079100 Sobic010G161300 Sobic010G161300 Sobic001G263500--Sobic010G161300 Sobic003G406500 Sobic003G406500 Sobic001G263500--Sobic003G406500 Sobic008G031600 Sobic008G031600 Sobic001G263500--Sobic008G031600 Sobic006G278400 Sobic006G278400 Sobic001G263500--Sobic006G278400 Sobic001G331100 Sobic001G331100 Sobic001G263500--Sobic001G331100 Sobic009G254400--Sobic001G263500 Sobic009G254400--Sobic003G406500 Sobic009G254400--Sobic008G163800 Sobic002G330800 Sobic002G330800 Sobic009G254400--Sobic002G330800 Sobic009G254400--Sobic001G331100 Sobic009G254400--Sobic010G179000 Sobic006G108000 Sobic006G108000 Sobic009G254400--Sobic006G108000 Sobic009G254400--Sobic006G278400 Sobic009G254400--Sobic006G079100 Sobic008G163800--Sobic008G031600 Sobic001G103400 Sobic001G103400 Sobic008G163800--Sobic001G103400 Sobic010G014900 Sobic010G014900 Sobic008G163800--Sobic010G014900 Sobic001G460700 Sobic001G460700 Sobic008G163800--Sobic001G460700 Sobic007G158400 Sobic007G158400 Sobic008G163800--Sobic007G158400 Sobic004G061600 Sobic004G061600 Sobic008G163800--Sobic004G061600 Sobic003G390300 Sobic003G390300 Sobic008G163800--Sobic003G390300 Sobic004G107400 Sobic004G107400 Sobic008G163800--Sobic004G107400 Sobic010G029200 Sobic010G029200 Sobic008G163800--Sobic010G029200 Sobic010G179000--Sobic008G031600 Sobic010G179000--Sobic001G460700 Sobic001G148600 Sobic001G148600 Sobic010G179000--Sobic001G148600 Sobic003G201400 Sobic003G201400 Sobic010G179000--Sobic003G201400 Sobic003G081400 Sobic003G081400 Sobic010G179000--Sobic003G081400 Sobic004G128600 Sobic004G128600 Sobic010G179000--Sobic004G128600 Sobic010G045300 Sobic010G045300 Sobic010G179000--Sobic010G045300 Sobic010G208300 Sobic010G208300 Sobic010G179000--Sobic010G208300 Sobic010G179000--Sobic010G029200 Sobic004G297800 Sobic004G297800 Sobic006G079100--Sobic004G297800 Sobic010G014200 Sobic010G014200 Sobic006G079100--Sobic010G014200 Sobic006G079100--Sobic001G263500 Sobic006G079100--Sobic004G128600 Sobic006G079100--Sobic010G161300 Sobic005G226900 Sobic005G226900 Sobic006G079100--Sobic005G226900 Sobic008G131200 Sobic008G131200 Sobic006G079100--Sobic008G131200 Sobic006G247500 Sobic006G247500 Sobic006G079100--Sobic006G247500 Sobic006G079100--Sobic010G179000 Sobic010G161300--Sobic001G148600 Sobic010G161300--Sobic004G128600 Sobic006G197000 Sobic006G197000 Sobic010G161300--Sobic006G197000 Sobic010G161300--Sobic008G031600 Sobic010G161300--Sobic003G201400 Sobic010G161300--Sobic005G226900 Sobic010G161300--Sobic010G014200 Sobic010G161300--Sobic006G278400 Sobic004G227000 Sobic004G227000 Sobic010G161300--Sobic004G227000 Sobic003G406500--Sobic009G254400 Sobic007G153300 Sobic007G153300 Sobic003G406500--Sobic007G153300 Sobic003G406500--Sobic006G108000 Sobic003G406500--Sobic008G163800 Sobic003G006500 Sobic003G006500 Sobic003G406500--Sobic003G006500 Sobic003G406500--Sobic001G263500 Sobic003G359200 Sobic003G359200 Sobic003G406500--Sobic003G359200 Sobic003G406500--Sobic001G331100 Sobic010G209800 Sobic010G209800 Sobic003G406500--Sobic010G209800 Sobic008G031600--Sobic003G081400 Sobic008G031600--Sobic003G201400 Sobic008G031600--Sobic010G045300 Sobic008G031600--Sobic010G029200 Sobic010G122533 Sobic010G122533 Sobic008G031600--Sobic010G122533 Sobic009G039400 Sobic009G039400 Sobic008G031600--Sobic009G039400 Sobic008G031600--Sobic010G208300 Sobic005G022600 Sobic005G022600 Sobic008G031600--Sobic005G022600 Sobic006G167200 Sobic006G167200 Sobic008G031600--Sobic006G167200 Sobic006G278400--Sobic004G227000 Sobic001G180300 Sobic001G180300 Sobic006G278400--Sobic001G180300 Sobic003G301200 Sobic003G301200 Sobic006G278400--Sobic003G301200 Sobic008G163600 Sobic008G163600 Sobic006G278400--Sobic008G163600 Sobic007G081300 Sobic007G081300 Sobic006G278400--Sobic007G081300 Sobic006G187600 Sobic006G187600 Sobic006G278400--Sobic006G187600 Sobic006G278400--Sobic010G014200 Sobic002G425900 Sobic002G425900 Sobic006G278400--Sobic002G425900 Sobic006G278400--Sobic004G128600 Sobic004G115600 Sobic004G115600 Sobic001G331100--Sobic004G115600 Sobic001G331100--Sobic006G108000 Sobic002G279300 Sobic002G279300 Sobic001G331100--Sobic002G279300 Sobic001G331100--Sobic009G254400 Sobic006G155900 Sobic006G155900 Sobic001G331100--Sobic006G155900 Sobic001G331100--Sobic008G163800 Sobic001G331100--Sobic003G406500 Sobic003G040100 Sobic003G040100 Sobic001G331100--Sobic003G040100 Sobic001G331100--Sobic001G263500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.