Gene annotation
Transcriptome id Sobic.002G330800.1,Sobic.002G330800.2,Sobic.002G330800.3
Synonym Sb02g035730
Functional annotation BTBN15 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
UniProt A0A1B6QET1 , A0A1B6QEU5
Pfam PF03000
Panther DB PTHR32370 PTHR32370:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22104 : Phototropic-responsive NPH3 family protein
RAP-DB (Rice) LOC_Os07g36230.1,LOC_Os07g36230.2 : BTBN15 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
MaizeGDB (Corn) Zm00025a048327 , Zm00025a014860
Brachypodium PNT74966 , PNT74964 , PNT74965 , KQK15854
Barley HORVU2Hr1G043330.15 , HORVU2Hr1G043330.14 , HORVU2Hr1G043330.13 , HORVU2Hr1G043330.12 , HORVU2Hr1G043330.11 , HORVU2Hr1G043330.10 , HORVU2Hr1G043330.7 , HORVU2Hr1G043330.6 , HORVU2Hr1G043330.5 , HORVU2Hr1G043330.4 , HORVU2Hr1G043330.3 , HORVU2Hr1G043330.2 , HORVU2Hr1G043330.1 , HORVU2Hr1G043330.9 , HORVU2Hr1G043330.8
Wheat TraesCS2D02G219600 , TraesCS2D02G219600 , TraesCS2A02G213700 , TraesCS2B02G238600
Populus -


JBrowse

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cDNA sequences
Sobic.002G330800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G254400 polygalacturonase inhibitor 1 precursor, putative, expressed -
2 Sobic.001G263500 glycosyl hydrolases family 17, putative, expressed -
3 Sobic.001G331100 expressed protein -
4 Sobic.003G406500 antifreeze glycoprotein, putative, expressed -
5 Sobic.007G162000 carboxyl-terminal peptidase, putative, expressed -
6 Sobic.008G163800 expressed protein -
7 Sobic.003G359200 DUF740 domain containing protein, expressed -
8 Sobic.001G303000 zinc finger family protein, putative, expressed -
9 Sobic.001G062700 GATA zinc finger domain containing protein, expressed -
10 Sobic.006G163650 - -
11 Sobic.007G139000 ZF-HD protein dimerisation region containing protein, expressed -
12 Sobic.002G340350 - -
13 Sobic.010G161300 receptor-like kinase, putative, expressed -
14 Sobic.002G035500 CIN-like (ClassII) Subclade 13 TCP(PubMedID : 21444336)@basic helix-loop-helix (bHLH) transcription factor(PubMedID : 23915383)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
15 Sobic.003G397000 expressed protein -
16 Sobic.009G136600 peptide transporter PTR2, putative, expressed -
17 Sobic.007G153300 ZOS8-07 - C2H2 zinc finger protein, expressed -
18 Sobic.010G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
19 Sobic.003G390300 expressed protein -
20 Sobic.004G061600 expressed protein -


Gene co-expression network
sample Sobic002G330800 Sobic002G330800 Sobic009G254400 Sobic009G254400 Sobic002G330800--Sobic009G254400 Sobic001G263500 Sobic001G263500 Sobic002G330800--Sobic001G263500 Sobic001G331100 Sobic001G331100 Sobic002G330800--Sobic001G331100 Sobic003G406500 Sobic003G406500 Sobic002G330800--Sobic003G406500 Sobic007G162000 Sobic007G162000 Sobic002G330800--Sobic007G162000 Sobic008G163800 Sobic008G163800 Sobic002G330800--Sobic008G163800 Sobic003G359200 Sobic003G359200 Sobic002G330800--Sobic003G359200 Sobic001G303000 Sobic001G303000 Sobic002G330800--Sobic001G303000 Sobic001G062700 Sobic001G062700 Sobic002G330800--Sobic001G062700 Sobic009G254400--Sobic001G263500 Sobic009G254400--Sobic003G406500 Sobic009G254400--Sobic008G163800 Sobic009G254400--Sobic002G330800 Sobic009G254400--Sobic001G331100 Sobic010G179000 Sobic010G179000 Sobic009G254400--Sobic010G179000 Sobic006G108000 Sobic006G108000 Sobic009G254400--Sobic006G108000 Sobic006G278400 Sobic006G278400 Sobic009G254400--Sobic006G278400 Sobic006G079100 Sobic006G079100 Sobic009G254400--Sobic006G079100 Sobic001G263500--Sobic009G254400 Sobic001G263500--Sobic008G163800 Sobic001G263500--Sobic010G179000 Sobic001G263500--Sobic006G079100 Sobic010G161300 Sobic010G161300 Sobic001G263500--Sobic010G161300 Sobic001G263500--Sobic003G406500 Sobic008G031600 Sobic008G031600 Sobic001G263500--Sobic008G031600 Sobic001G263500--Sobic006G278400 Sobic001G263500--Sobic001G331100 Sobic004G115600 Sobic004G115600 Sobic001G331100--Sobic004G115600 Sobic001G331100--Sobic006G108000 Sobic002G279300 Sobic002G279300 Sobic001G331100--Sobic002G279300 Sobic001G331100--Sobic009G254400 Sobic006G155900 Sobic006G155900 Sobic001G331100--Sobic006G155900 Sobic001G331100--Sobic008G163800 Sobic001G331100--Sobic003G406500 Sobic003G040100 Sobic003G040100 Sobic001G331100--Sobic003G040100 Sobic001G331100--Sobic001G263500 Sobic003G406500--Sobic009G254400 Sobic007G153300 Sobic007G153300 Sobic003G406500--Sobic007G153300 Sobic003G406500--Sobic006G108000 Sobic003G406500--Sobic008G163800 Sobic003G006500 Sobic003G006500 Sobic003G406500--Sobic003G006500 Sobic003G406500--Sobic001G263500 Sobic003G406500--Sobic003G359200 Sobic003G406500--Sobic001G331100 Sobic010G209800 Sobic010G209800 Sobic003G406500--Sobic010G209800 Sobic002G202500 Sobic002G202500 Sobic007G162000--Sobic002G202500 Sobic009G195600 Sobic009G195600 Sobic007G162000--Sobic009G195600 Sobic007G019600 Sobic007G019600 Sobic007G162000--Sobic007G019600 Sobic003G047200 Sobic003G047200 Sobic007G162000--Sobic003G047200 Sobic007G162000--Sobic001G331100 Sobic002G035500 Sobic002G035500 Sobic007G162000--Sobic002G035500 Sobic001G253900 Sobic001G253900 Sobic007G162000--Sobic001G253900 Sobic007G162000--Sobic006G155900 Sobic003G432000 Sobic003G432000 Sobic007G162000--Sobic003G432000 Sobic008G163800--Sobic008G031600 Sobic001G103400 Sobic001G103400 Sobic008G163800--Sobic001G103400 Sobic010G014900 Sobic010G014900 Sobic008G163800--Sobic010G014900 Sobic001G460700 Sobic001G460700 Sobic008G163800--Sobic001G460700 Sobic007G158400 Sobic007G158400 Sobic008G163800--Sobic007G158400 Sobic004G061600 Sobic004G061600 Sobic008G163800--Sobic004G061600 Sobic003G390300 Sobic003G390300 Sobic008G163800--Sobic003G390300 Sobic004G107400 Sobic004G107400 Sobic008G163800--Sobic004G107400 Sobic010G029200 Sobic010G029200 Sobic008G163800--Sobic010G029200 Sobic003G359200--Sobic007G153300 Sobic003G359200--Sobic004G107400 Sobic003G359200--Sobic010G014900 Sobic003G359200--Sobic001G062700 Sobic003G359200--Sobic003G390300 Sobic003G359200--Sobic007G158400 Sobic003G359200--Sobic003G006500 Sobic003G359200--Sobic008G163800 Sobic005G168500 Sobic005G168500 Sobic003G359200--Sobic005G168500 Sobic007G139000 Sobic007G139000 Sobic001G303000--Sobic007G139000 Sobic001G303000--Sobic001G062700 Sobic001G303000--Sobic004G061600 Sobic001G303000--Sobic003G390300 Sobic003G111600 Sobic003G111600 Sobic001G303000--Sobic003G111600 Sobic003G191800 Sobic003G191800 Sobic001G303000--Sobic003G191800 Sobic005G102200 Sobic005G102200 Sobic001G303000--Sobic005G102200 Sobic002G101800 Sobic002G101800 Sobic001G303000--Sobic002G101800 Sobic008G136900 Sobic008G136900 Sobic001G303000--Sobic008G136900 Sobic001G062700--Sobic003G390300 Sobic001G062700--Sobic004G061600 Sobic001G062700--Sobic008G136900 Sobic007G092300 Sobic007G092300 Sobic001G062700--Sobic007G092300 Sobic010G119600 Sobic010G119600 Sobic001G062700--Sobic010G119600 Sobic010G259200 Sobic010G259200 Sobic001G062700--Sobic010G259200 Sobic007G206700 Sobic007G206700 Sobic001G062700--Sobic007G206700 Sobic001G062700--Sobic010G014900 Sobic001G062700--Sobic004G107400
Octagon: transcription factors


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