Gene annotation
Transcriptome id Sobic.002G035500.1
Synonym TCP-like gene;TCP2-2;SbTCP3;SbTCP3, TCP2, Sb02g003070
Functional annotation CIN-like (ClassII) Subclade 13 TCP (PubMedID : 21444336)
basic helix-loop-helix (bHLH) transcription factor (PubMedID : 23915383)
"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)." (PubMedID : 27917941)
"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)" (PubMedID : 28383054)
TCP family transcription factor, putative, expressed
UniProt C5X9K3
Pfam PF03634
Panther DB PTHR31072 PTHR31072:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G18390 : TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
RAP-DB (Rice) LOC_Os07g05720.1 : TCP family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a016635 , Zm00025a045028 , Zm00025a016162 , Zm00025a008470
Brachypodium KQK21060 , KQK12863
Barley HORVU2Hr1G060120.1
Wheat -
Populus -


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cDNA sequences
Sobic.002G035500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G019600 expressed protein -
2 Sobic.005G129600 OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
3 Sobic.004G113900 polygalacturonase, putative, expressed -
4 Sobic.010G209800 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
5 Sobic.004G191600 expansin precursor, putative, expressed -
6 Sobic.003G282600 glycosyl transferase 8 domain containing protein, putative, expressed -
7 Sobic.009G257900 expressed protein -
8 Sobic.004G237300 PCF-like (ClassI) Subclade 5 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP-domain protein, putative, expressed -
9 Sobic.007G162000 carboxyl-terminal peptidase, putative, expressed -
10 Sobic.001G494300 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
11 Sobic.010G202100 expressed protein -
12 Sobic.009G195600 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
13 Sobic.009G163700 fasciclin-like arabinogalactan protein, putative, expressed -
14 Sobic.004G357000 inactive receptor kinase At2g26730 precursor, putative, expressed -
15 Sobic.006G155900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
16 Sobic.003G406500 antifreeze glycoprotein, putative, expressed -
17 Sobic.002G202500 spotted leaf 11, putative, expressed -
18 Sobic.009G203200 pectinesterase, putative, expressed K01051: pectinesterase
19 Sobic.009G025400 myosin heavy chain-related, putative, expressed -
20 Sobic.003G432000 expressed protein -


Gene co-expression network
sample Sobic002G035500 Sobic002G035500 Sobic007G019600 Sobic007G019600 Sobic002G035500--Sobic007G019600 Sobic005G129600 Sobic005G129600 Sobic002G035500--Sobic005G129600 Sobic004G113900 Sobic004G113900 Sobic002G035500--Sobic004G113900 Sobic010G209800 Sobic010G209800 Sobic002G035500--Sobic010G209800 Sobic004G191600 Sobic004G191600 Sobic002G035500--Sobic004G191600 Sobic003G282600 Sobic003G282600 Sobic002G035500--Sobic003G282600 Sobic009G257900 Sobic009G257900 Sobic002G035500--Sobic009G257900 Sobic004G237300 Sobic004G237300 Sobic002G035500--Sobic004G237300 Sobic007G162000 Sobic007G162000 Sobic002G035500--Sobic007G162000 Sobic007G019600--Sobic002G035500 Sobic007G019600--Sobic004G237300 Sobic001G494300 Sobic001G494300 Sobic007G019600--Sobic001G494300 Sobic007G019600--Sobic003G282600 Sobic006G155900 Sobic006G155900 Sobic007G019600--Sobic006G155900 Sobic007G019600--Sobic007G162000 Sobic010G202100 Sobic010G202100 Sobic007G019600--Sobic010G202100 Sobic007G019600--Sobic005G129600 Sobic009G025400 Sobic009G025400 Sobic007G019600--Sobic009G025400 Sobic004G357000 Sobic004G357000 Sobic005G129600--Sobic004G357000 Sobic005G129600--Sobic004G113900 Sobic003G432000 Sobic003G432000 Sobic005G129600--Sobic003G432000 Sobic007G211200 Sobic007G211200 Sobic005G129600--Sobic007G211200 Sobic001G267800 Sobic001G267800 Sobic005G129600--Sobic001G267800 Sobic005G129600--Sobic002G035500 Sobic003G089300 Sobic003G089300 Sobic005G129600--Sobic003G089300 Sobic005G129600--Sobic009G257900 Sobic004G317200 Sobic004G317200 Sobic005G129600--Sobic004G317200 Sobic004G113900--Sobic005G129600 Sobic004G113900--Sobic003G432000 Sobic004G113900--Sobic002G035500 Sobic004G113900--Sobic009G257900 Sobic004G113900--Sobic001G267800 Sobic002G260600 Sobic002G260600 Sobic004G113900--Sobic002G260600 Sobic004G113900--Sobic007G211200 Sobic001G247700 Sobic001G247700 Sobic004G113900--Sobic001G247700 Sobic004G115700 Sobic004G115700 Sobic004G113900--Sobic004G115700 Sobic010G209800--Sobic002G035500 Sobic003G406500 Sobic003G406500 Sobic010G209800--Sobic003G406500 Sobic007G153300 Sobic007G153300 Sobic010G209800--Sobic007G153300 Sobic010G234900 Sobic010G234900 Sobic010G209800--Sobic010G234900 Sobic004G336700 Sobic004G336700 Sobic010G209800--Sobic004G336700 Sobic003G359200 Sobic003G359200 Sobic010G209800--Sobic003G359200 Sobic010G209800--Sobic001G494300 Sobic002G202500 Sobic002G202500 Sobic010G209800--Sobic002G202500 Sobic007G038000 Sobic007G038000 Sobic010G209800--Sobic007G038000 Sobic004G191600--Sobic002G035500 Sobic006G112800 Sobic006G112800 Sobic004G191600--Sobic006G112800 Sobic010G215300 Sobic010G215300 Sobic004G191600--Sobic010G215300 Sobic003G414400 Sobic003G414400 Sobic004G191600--Sobic003G414400 Sobic004G191600--Sobic005G129600 Sobic010G211800 Sobic010G211800 Sobic004G191600--Sobic010G211800 Sobic001G140600 Sobic001G140600 Sobic004G191600--Sobic001G140600 Sobic008G096200 Sobic008G096200 Sobic004G191600--Sobic008G096200 Sobic001G540900 Sobic001G540900 Sobic004G191600--Sobic001G540900 Sobic003G282600--Sobic007G019600 Sobic003G282600--Sobic002G035500 Sobic003G282600--Sobic004G237300 Sobic001G474300 Sobic001G474300 Sobic003G282600--Sobic001G474300 Sobic009G195600 Sobic009G195600 Sobic003G282600--Sobic009G195600 Sobic003G282600--Sobic010G202100 Sobic001G496700 Sobic001G496700 Sobic003G282600--Sobic001G496700 Sobic003G282600--Sobic007G162000 Sobic007G211400 Sobic007G211400 Sobic003G282600--Sobic007G211400 Sobic009G257900--Sobic004G317200 Sobic004G108400 Sobic004G108400 Sobic009G257900--Sobic004G108400 Sobic009G257900--Sobic009G025400 Sobic009G257900--Sobic005G129600 Sobic004G313900 Sobic004G313900 Sobic009G257900--Sobic004G313900 Sobic004G329000 Sobic004G329000 Sobic009G257900--Sobic004G329000 Sobic001G390400 Sobic001G390400 Sobic009G257900--Sobic001G390400 Sobic009G257900--Sobic004G357000 Sobic009G257900--Sobic004G113900 Sobic004G237300--Sobic007G019600 Sobic004G237300--Sobic002G035500 Sobic004G237300--Sobic001G494300 Sobic004G237300--Sobic003G414400 Sobic008G147500 Sobic008G147500 Sobic004G237300--Sobic008G147500 Sobic004G237300--Sobic006G155900 Sobic003G047200 Sobic003G047200 Sobic004G237300--Sobic003G047200 Sobic004G237300--Sobic003G282600 Sobic004G237300--Sobic010G215300 Sobic007G162000--Sobic002G202500 Sobic007G162000--Sobic009G195600 Sobic007G162000--Sobic007G019600 Sobic007G162000--Sobic003G047200 Sobic001G331100 Sobic001G331100 Sobic007G162000--Sobic001G331100 Sobic007G162000--Sobic002G035500 Sobic001G253900 Sobic001G253900 Sobic007G162000--Sobic001G253900 Sobic007G162000--Sobic006G155900 Sobic007G162000--Sobic003G432000
Octagon: transcription factors


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