Gene annotation
Transcriptome id Sobic.007G019600.3,Sobic.007G019600.2,Sobic.007G019600.1
Synonym Sb07g001690
Functional annotation expressed protein
UniProt A0A1Z5R7U4 , A0A1Z5R8N4 , C5YMD3
Pfam PF00069 PF08263 PF13855 PF00069 PF13855 PF00069
Panther DB PTHR27006 PTHR27006:SF18
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT2G45340 : Leucine-rich repeat protein kinase family protein
RAP-DB (Rice) LOC_Os08g02440.1 : expressed protein
MaizeGDB (Corn) Zm00025a013833 , Zm00025a040295 , Zm00025a053055
Brachypodium KQJ94884
Barley HORVU7Hr1G075220.3 , HORVU7Hr1G075220.2 , HORVU7Hr1G075220.7 , HORVU7Hr1G075220.5 , HORVU7Hr1G075220.4 , HORVU7Hr1G075220.6
Wheat TraesCS7B02G217000 , TraesCS7D02G313000 , TraesCS4A02G371100 , TraesCS7A02G316000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G035500 CIN-like (ClassII) Subclade 13 TCP(PubMedID : 21444336)@basic helix-loop-helix (bHLH) transcription factor(PubMedID : 23915383)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
2 Sobic.004G237300 PCF-like (ClassI) Subclade 5 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP-domain protein, putative, expressed -
3 Sobic.001G494300 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
4 Sobic.003G282600 glycosyl transferase 8 domain containing protein, putative, expressed -
5 Sobic.006G155900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
6 Sobic.007G162000 carboxyl-terminal peptidase, putative, expressed -
7 Sobic.010G202100 expressed protein -
8 Sobic.005G129600 OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
9 Sobic.009G025400 myosin heavy chain-related, putative, expressed -
10 Sobic.003G047200 expressed protein -
11 Sobic.009G195600 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
12 Sobic.002G202500 spotted leaf 11, putative, expressed -
13 Sobic.010G209800 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
14 Sobic.001G265300 acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
15 Sobic.004G357000 inactive receptor kinase At2g26730 precursor, putative, expressed -
16 Sobic.001G331100 expressed protein -
17 Sobic.006G201300 expressed protein -
18 Sobic.009G163700 fasciclin-like arabinogalactan protein, putative, expressed -
19 Sobic.006G112800 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
20 Sobic.003G406500 antifreeze glycoprotein, putative, expressed -


Gene co-expression network
sample Sobic007G019600 Sobic007G019600 Sobic002G035500 Sobic002G035500 Sobic007G019600--Sobic002G035500 Sobic004G237300 Sobic004G237300 Sobic007G019600--Sobic004G237300 Sobic001G494300 Sobic001G494300 Sobic007G019600--Sobic001G494300 Sobic003G282600 Sobic003G282600 Sobic007G019600--Sobic003G282600 Sobic006G155900 Sobic006G155900 Sobic007G019600--Sobic006G155900 Sobic007G162000 Sobic007G162000 Sobic007G019600--Sobic007G162000 Sobic010G202100 Sobic010G202100 Sobic007G019600--Sobic010G202100 Sobic005G129600 Sobic005G129600 Sobic007G019600--Sobic005G129600 Sobic009G025400 Sobic009G025400 Sobic007G019600--Sobic009G025400 Sobic002G035500--Sobic007G019600 Sobic002G035500--Sobic005G129600 Sobic004G113900 Sobic004G113900 Sobic002G035500--Sobic004G113900 Sobic010G209800 Sobic010G209800 Sobic002G035500--Sobic010G209800 Sobic004G191600 Sobic004G191600 Sobic002G035500--Sobic004G191600 Sobic002G035500--Sobic003G282600 Sobic009G257900 Sobic009G257900 Sobic002G035500--Sobic009G257900 Sobic002G035500--Sobic004G237300 Sobic002G035500--Sobic007G162000 Sobic004G237300--Sobic007G019600 Sobic004G237300--Sobic002G035500 Sobic004G237300--Sobic001G494300 Sobic003G414400 Sobic003G414400 Sobic004G237300--Sobic003G414400 Sobic008G147500 Sobic008G147500 Sobic004G237300--Sobic008G147500 Sobic004G237300--Sobic006G155900 Sobic003G047200 Sobic003G047200 Sobic004G237300--Sobic003G047200 Sobic004G237300--Sobic003G282600 Sobic010G215300 Sobic010G215300 Sobic004G237300--Sobic010G215300 Sobic001G494300--Sobic006G155900 Sobic008G020500 Sobic008G020500 Sobic001G494300--Sobic008G020500 Sobic004G198200 Sobic004G198200 Sobic001G494300--Sobic004G198200 Sobic003G040100 Sobic003G040100 Sobic001G494300--Sobic003G040100 Sobic001G494300--Sobic007G019600 Sobic001G427400 Sobic001G427400 Sobic001G494300--Sobic001G427400 Sobic001G494300--Sobic003G047200 Sobic009G163700 Sobic009G163700 Sobic001G494300--Sobic009G163700 Sobic007G130000 Sobic007G130000 Sobic001G494300--Sobic007G130000 Sobic003G282600--Sobic007G019600 Sobic003G282600--Sobic002G035500 Sobic003G282600--Sobic004G237300 Sobic001G474300 Sobic001G474300 Sobic003G282600--Sobic001G474300 Sobic009G195600 Sobic009G195600 Sobic003G282600--Sobic009G195600 Sobic003G282600--Sobic010G202100 Sobic001G496700 Sobic001G496700 Sobic003G282600--Sobic001G496700 Sobic003G282600--Sobic007G162000 Sobic007G211400 Sobic007G211400 Sobic003G282600--Sobic007G211400 Sobic009G190400 Sobic009G190400 Sobic006G155900--Sobic009G190400 Sobic006G155900--Sobic004G198200 Sobic006G155900--Sobic003G040100 Sobic006G155900--Sobic001G494300 Sobic006G155900--Sobic008G020500 Sobic006G155900--Sobic003G047200 Sobic006G155900--Sobic003G414400 Sobic001G070200 Sobic001G070200 Sobic006G155900--Sobic001G070200 Sobic001G331100 Sobic001G331100 Sobic006G155900--Sobic001G331100 Sobic002G202500 Sobic002G202500 Sobic007G162000--Sobic002G202500 Sobic007G162000--Sobic009G195600 Sobic007G162000--Sobic007G019600 Sobic007G162000--Sobic003G047200 Sobic007G162000--Sobic001G331100 Sobic007G162000--Sobic002G035500 Sobic001G253900 Sobic001G253900 Sobic007G162000--Sobic001G253900 Sobic007G162000--Sobic006G155900 Sobic003G432000 Sobic003G432000 Sobic007G162000--Sobic003G432000 Sobic010G202100--Sobic010G215300 Sobic010G234800 Sobic010G234800 Sobic010G202100--Sobic010G234800 Sobic001G098900 Sobic001G098900 Sobic010G202100--Sobic001G098900 Sobic007G017700 Sobic007G017700 Sobic010G202100--Sobic007G017700 Sobic010G202100--Sobic003G414400 Sobic010G202100--Sobic009G025400 Sobic010G202100--Sobic003G047200 Sobic006G201300 Sobic006G201300 Sobic010G202100--Sobic006G201300 Sobic008G114500 Sobic008G114500 Sobic010G202100--Sobic008G114500 Sobic004G357000 Sobic004G357000 Sobic005G129600--Sobic004G357000 Sobic005G129600--Sobic004G113900 Sobic005G129600--Sobic003G432000 Sobic007G211200 Sobic007G211200 Sobic005G129600--Sobic007G211200 Sobic001G267800 Sobic001G267800 Sobic005G129600--Sobic001G267800 Sobic005G129600--Sobic002G035500 Sobic003G089300 Sobic003G089300 Sobic005G129600--Sobic003G089300 Sobic005G129600--Sobic009G257900 Sobic004G317200 Sobic004G317200 Sobic005G129600--Sobic004G317200 Sobic005G056800 Sobic005G056800 Sobic009G025400--Sobic005G056800 Sobic009G025400--Sobic010G202100 Sobic004G108400 Sobic004G108400 Sobic009G025400--Sobic004G108400 Sobic002G394200 Sobic002G394200 Sobic009G025400--Sobic002G394200 Sobic009G025400--Sobic009G257900 Sobic006G112800 Sobic006G112800 Sobic009G025400--Sobic006G112800 Sobic009G025400--Sobic003G414400 Sobic001G284900 Sobic001G284900 Sobic009G025400--Sobic001G284900 Sobic003G083500 Sobic003G083500 Sobic009G025400--Sobic003G083500
Octagon: transcription factors


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