Gene annotation
Transcriptome id Sobic.001G265300.1
Synonym Sb01g025880
Functional annotation acyl-desaturase, chloroplast precursor, putative, expressed
UniProt C5WP02
Pfam PF03405
Panther DB PTHR31155 PTHR31155:SF10
NCBI CDD -
KEGG Orthology K03921; FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
Gene Ontology GO:0006631; fatty acid metabolic process


Orthologs (automatic annotation)
TAIR AT3G02610 : Plant stearoyl-acyl-carrier-protein desaturase family protein
RAP-DB (Rice) LOC_Os08g09950.1 : acyl-desaturase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a054837 , Zm00025a039503 , Zm00025a003802
Brachypodium KQJ95532 , KQK10887
Barley HORVU2Hr1G012600.1 , HORVU2Hr1G012600.2 , HORVU7Hr1G040140.1 , HORVU7Hr1G040140.2 , HORVU7Hr1G040140.3 , HORVU2Hr1G012780.1 , HORVU2Hr1G006990.1 , HORVU3Hr1G091320.2 , HORVU3Hr1G091320.3 , HORVU3Hr1G091320.1
Wheat TraesCS2B02G090700 , TraesCS2B02G090700 , TraesCS2B02G090400 , TraesCS3A02G408700 , TraesCS7B02G102300 , TraesCS2A02G075300 , TraesCS7A02G196500 , TraesCS2D02G074200 , TraesCS2D02G074000 , TraesCS2A02G075500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G083500 inactive receptor kinase At2g26730 precursor, putative, expressed -
2 Sobic.007G170100 male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
3 Sobic.009G025400 myosin heavy chain-related, putative, expressed -
4 Sobic.004G336700 helix-loop-helix DNA-binding domain containing protein, expressed -
5 Sobic.002G312300 SQUAMOSA promoter binding-like transcription factor(PubMedID : 27016024)@OsSPL13 - SBP-box gene family member, expressed -
6 Sobic.001G247700 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
7 Sobic.005G009600 pectinesterase, putative, expressed K01051: pectinesterase
8 Sobic.003G027100 keratin, type I cytoskeletal 9, putative, expressed -
9 Sobic.006G273600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.002G425600 down-regulated TF in developmental senescence(PubMedID : 27586543)@bZIP transcription factor domain containing protein, expressed K14432: ABA responsive element binding factor
11 Sobic.004G357000 inactive receptor kinase At2g26730 precursor, putative, expressed -
12 Sobic.005G034500 receptor kinase, putative, expressed -
13 Sobic.002G202500 spotted leaf 11, putative, expressed -
14 Sobic.010G235300 acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
15 Sobic.009G023900 homeobox domain containing protein, expressed -
16 Sobic.001G286700 homeobox and START domains containing protein, putative, expressed -
17 Sobic.002G363300 - -
18 Sobic.009G070500 uncharacterized protein At4g06744 precursor, putative, expressed -
19 Sobic.003G010700 plant-specific domain TIGR01568 family protein, expressed -
20 Sobic.010G166300 expressed protein -


Gene co-expression network
sample Sobic001G265300 Sobic001G265300 Sobic003G083500 Sobic003G083500 Sobic001G265300--Sobic003G083500 Sobic007G170100 Sobic007G170100 Sobic001G265300--Sobic007G170100 Sobic009G025400 Sobic009G025400 Sobic001G265300--Sobic009G025400 Sobic004G336700 Sobic004G336700 Sobic001G265300--Sobic004G336700 Sobic002G312300 Sobic002G312300 Sobic001G265300--Sobic002G312300 Sobic001G247700 Sobic001G247700 Sobic001G265300--Sobic001G247700 Sobic005G009600 Sobic005G009600 Sobic001G265300--Sobic005G009600 Sobic003G027100 Sobic003G027100 Sobic001G265300--Sobic003G027100 Sobic006G273600 Sobic006G273600 Sobic001G265300--Sobic006G273600 Sobic003G083500--Sobic001G247700 Sobic007G211200 Sobic007G211200 Sobic003G083500--Sobic007G211200 Sobic003G083500--Sobic001G265300 Sobic005G034500 Sobic005G034500 Sobic003G083500--Sobic005G034500 Sobic004G357000 Sobic004G357000 Sobic003G083500--Sobic004G357000 Sobic006G108100 Sobic006G108100 Sobic003G083500--Sobic006G108100 Sobic005G129600 Sobic005G129600 Sobic003G083500--Sobic005G129600 Sobic003G083500--Sobic009G025400 Sobic009G257900 Sobic009G257900 Sobic003G083500--Sobic009G257900 Sobic007G170100--Sobic006G273600 Sobic007G170100--Sobic005G009600 Sobic010G235300 Sobic010G235300 Sobic007G170100--Sobic010G235300 Sobic003G010700 Sobic003G010700 Sobic007G170100--Sobic003G010700 Sobic002G363300 Sobic002G363300 Sobic007G170100--Sobic002G363300 Sobic001G286700 Sobic001G286700 Sobic007G170100--Sobic001G286700 Sobic007G165800 Sobic007G165800 Sobic007G170100--Sobic007G165800 Sobic005G199700 Sobic005G199700 Sobic007G170100--Sobic005G199700 Sobic007G170100--Sobic003G027100 Sobic005G056800 Sobic005G056800 Sobic009G025400--Sobic005G056800 Sobic010G202100 Sobic010G202100 Sobic009G025400--Sobic010G202100 Sobic004G108400 Sobic004G108400 Sobic009G025400--Sobic004G108400 Sobic002G394200 Sobic002G394200 Sobic009G025400--Sobic002G394200 Sobic009G025400--Sobic009G257900 Sobic006G112800 Sobic006G112800 Sobic009G025400--Sobic006G112800 Sobic003G414400 Sobic003G414400 Sobic009G025400--Sobic003G414400 Sobic001G284900 Sobic001G284900 Sobic009G025400--Sobic001G284900 Sobic009G025400--Sobic003G083500 Sobic002G202500 Sobic002G202500 Sobic004G336700--Sobic002G202500 Sobic004G336700--Sobic001G265300 Sobic010G209800 Sobic010G209800 Sobic004G336700--Sobic010G209800 Sobic001G273100 Sobic001G273100 Sobic004G336700--Sobic001G273100 Sobic002G412400 Sobic002G412400 Sobic004G336700--Sobic002G412400 Sobic002G229800 Sobic002G229800 Sobic004G336700--Sobic002G229800 Sobic006G108000 Sobic006G108000 Sobic004G336700--Sobic006G108000 Sobic003G406500 Sobic003G406500 Sobic004G336700--Sobic003G406500 Sobic006G163600 Sobic006G163600 Sobic004G336700--Sobic006G163600 Sobic002G312200 Sobic002G312200 Sobic002G312300--Sobic002G312200 Sobic010G166300 Sobic010G166300 Sobic002G312300--Sobic010G166300 Sobic007G076100 Sobic007G076100 Sobic002G312300--Sobic007G076100 Sobic003G178500 Sobic003G178500 Sobic002G312300--Sobic003G178500 Sobic005G218000 Sobic005G218000 Sobic002G312300--Sobic005G218000 Sobic002G312300--Sobic003G027100 Sobic009G023900 Sobic009G023900 Sobic002G312300--Sobic009G023900 Sobic001G341700 Sobic001G341700 Sobic002G312300--Sobic001G341700 Sobic004G318800 Sobic004G318800 Sobic002G312300--Sobic004G318800 Sobic007G181100 Sobic007G181100 Sobic001G247700--Sobic007G181100 Sobic001G247700--Sobic003G083500 Sobic001G247700--Sobic006G108100 Sobic001G068800 Sobic001G068800 Sobic001G247700--Sobic001G068800 Sobic002G260600 Sobic002G260600 Sobic001G247700--Sobic002G260600 Sobic003G113500 Sobic003G113500 Sobic001G247700--Sobic003G113500 Sobic001G247700--Sobic007G211200 Sobic001G247700--Sobic004G357000 Sobic001G247700--Sobic005G129600 Sobic005G009600--Sobic006G273600 Sobic005G009600--Sobic010G166300 Sobic005G009600--Sobic007G170100 Sobic005G009600--Sobic009G023900 Sobic005G009600--Sobic010G235300 Sobic005G009600--Sobic002G363300 Sobic005G009600--Sobic001G286700 Sobic005G009600--Sobic003G027100 Sobic005G009600--Sobic003G178500 Sobic003G027100--Sobic003G178500 Sobic003G027100--Sobic002G363300 Sobic003G027100--Sobic001G286700 Sobic003G027100--Sobic010G235300 Sobic004G211700 Sobic004G211700 Sobic003G027100--Sobic004G211700 Sobic003G027100--Sobic010G166300 Sobic003G027100--Sobic007G165800 Sobic003G027100--Sobic005G034500 Sobic003G027100--Sobic002G312300 Sobic006G273600--Sobic007G170100 Sobic006G273600--Sobic005G009600 Sobic006G273600--Sobic002G363300 Sobic006G273600--Sobic003G010700 Sobic006G273600--Sobic010G235300 Sobic006G273600--Sobic001G286700 Sobic006G273600--Sobic005G199700 Sobic006G273600--Sobic003G027100 Sobic006G273600--Sobic010G166300
Octagon: transcription factors


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