Gene annotation
Transcriptome id Sobic.004G336700.2,Sobic.004G336700.1
Synonym SPT, Sb04g036450
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A194YTY9 , A0A194YST9
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF147
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G36930 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g56140.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022522 , Zm00025a049914
Brachypodium PNT76463 , PNT76464 , KQK01240 , KQK01241 , PNT69395
Barley HORVU7Hr1G026560.20 , HORVU7Hr1G026560.8 , HORVU7Hr1G026560.6 , HORVU5Hr1G093310.22 , HORVU5Hr1G093310.23 , HORVU5Hr1G093310.20 , HORVU5Hr1G093310.21 , HORVU7Hr1G026560.7 , HORVU7Hr1G026560.9 , HORVU7Hr1G026560.2 , HORVU7Hr1G026560.3 , HORVU6Hr1G088020.10 , HORVU6Hr1G088020.11 , HORVU6Hr1G088020.12 , HORVU6Hr1G088020.13 , HORVU6Hr1G088020.8 , HORVU6Hr1G088020.9 , HORVU6Hr1G088020.2 , HORVU6Hr1G088020.3 , HORVU6Hr1G088020.1 , HORVU6Hr1G088020.6 , HORVU6Hr1G088020.7 , HORVU6Hr1G088020.4 , HORVU6Hr1G088020.5 , HORVU5Hr1G093310.17 , HORVU5Hr1G093310.16 , HORVU5Hr1G093310.15 , HORVU5Hr1G093310.13 , HORVU5Hr1G093310.12 , HORVU5Hr1G093310.11 , HORVU5Hr1G093310.10 , HORVU5Hr1G093310.19 , HORVU5Hr1G093310.18 , HORVU5Hr1G093310.9 , HORVU5Hr1G093310.8 , HORVU5Hr1G093310.7 , HORVU5Hr1G093310.6 , HORVU5Hr1G093310.4 , HORVU5Hr1G093310.1 , HORVU7Hr1G026560.24 , HORVU7Hr1G026560.27 , HORVU7Hr1G026560.26 , HORVU7Hr1G026560.23 , HORVU7Hr1G026560.10 , HORVU7Hr1G026560.11 , HORVU7Hr1G026560.12 , HORVU7Hr1G026560.13 , HORVU7Hr1G026560.14 , HORVU7Hr1G026560.15 , HORVU7Hr1G026560.16 , HORVU7Hr1G026560.17 , HORVU7Hr1G026560.25
Wheat TraesCS5D02G386500 , TraesCS5D02G386500 , TraesCS7B02G026300 , TraesCS4B02G061800 , TraesCS5A02G376500 , TraesCS6A02G190600 , TraesCS5B02G380200 , TraesCS6A02G373500 , TraesCS6A02G373500 , TraesCS7A02G126900 , TraesCS7D02G124700 , TraesCS3A02G357000 , TraesCS6D02G357700 , TraesCS6D02G357700 , TraesCS6B02G411300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G202500 spotted leaf 11, putative, expressed -
2 Sobic.001G265300 acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
3 Sobic.010G209800 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
4 Sobic.001G273100 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
5 Sobic.002G412400 heavy metal-associated domain containing protein, expressed -
6 Sobic.002G229800 DUF617 domain containing protein, expressed -
7 Sobic.006G108000 formin, putative, expressed -
8 Sobic.003G406500 antifreeze glycoprotein, putative, expressed -
9 Sobic.006G163600 Trihelix Family(PubMedID : 24864043)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.010G246500 glycosyl hydrolases family 16, putative, expressed -
11 Sobic.009G070500 uncharacterized protein At4g06744 precursor, putative, expressed -
12 Sobic.004G283800 dehydration response related protein, putative, expressed -
13 Sobic.006G014400 pectate lyase precursor, putative, expressed K01728: pectate lyase
14 Sobic.007G162000 carboxyl-terminal peptidase, putative, expressed -
15 Sobic.008G145300 BTBN24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -
16 Sobic.009G195600 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
17 Sobic.001G441700 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
18 Sobic.002G394200 expressed protein K15711: SMARCA3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3
19 Sobic.003G325400 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
20 Sobic.009G254400 polygalacturonase inhibitor 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic004G336700 Sobic004G336700 Sobic002G202500 Sobic002G202500 Sobic004G336700--Sobic002G202500 Sobic001G265300 Sobic001G265300 Sobic004G336700--Sobic001G265300 Sobic010G209800 Sobic010G209800 Sobic004G336700--Sobic010G209800 Sobic001G273100 Sobic001G273100 Sobic004G336700--Sobic001G273100 Sobic002G412400 Sobic002G412400 Sobic004G336700--Sobic002G412400 Sobic002G229800 Sobic002G229800 Sobic004G336700--Sobic002G229800 Sobic006G108000 Sobic006G108000 Sobic004G336700--Sobic006G108000 Sobic003G406500 Sobic003G406500 Sobic004G336700--Sobic003G406500 Sobic006G163600 Sobic006G163600 Sobic004G336700--Sobic006G163600 Sobic007G162000 Sobic007G162000 Sobic002G202500--Sobic007G162000 Sobic002G202500--Sobic004G336700 Sobic001G247700 Sobic001G247700 Sobic002G202500--Sobic001G247700 Sobic009G195600 Sobic009G195600 Sobic002G202500--Sobic009G195600 Sobic002G202500--Sobic001G265300 Sobic004G113900 Sobic004G113900 Sobic002G202500--Sobic004G113900 Sobic007G019600 Sobic007G019600 Sobic002G202500--Sobic007G019600 Sobic002G202500--Sobic010G209800 Sobic004G283800 Sobic004G283800 Sobic002G202500--Sobic004G283800 Sobic003G083500 Sobic003G083500 Sobic001G265300--Sobic003G083500 Sobic007G170100 Sobic007G170100 Sobic001G265300--Sobic007G170100 Sobic009G025400 Sobic009G025400 Sobic001G265300--Sobic009G025400 Sobic001G265300--Sobic004G336700 Sobic002G312300 Sobic002G312300 Sobic001G265300--Sobic002G312300 Sobic001G265300--Sobic001G247700 Sobic005G009600 Sobic005G009600 Sobic001G265300--Sobic005G009600 Sobic003G027100 Sobic003G027100 Sobic001G265300--Sobic003G027100 Sobic006G273600 Sobic006G273600 Sobic001G265300--Sobic006G273600 Sobic002G035500 Sobic002G035500 Sobic010G209800--Sobic002G035500 Sobic010G209800--Sobic003G406500 Sobic007G153300 Sobic007G153300 Sobic010G209800--Sobic007G153300 Sobic010G234900 Sobic010G234900 Sobic010G209800--Sobic010G234900 Sobic010G209800--Sobic004G336700 Sobic003G359200 Sobic003G359200 Sobic010G209800--Sobic003G359200 Sobic001G494300 Sobic001G494300 Sobic010G209800--Sobic001G494300 Sobic010G209800--Sobic002G202500 Sobic007G038000 Sobic007G038000 Sobic010G209800--Sobic007G038000 Sobic006G177000 Sobic006G177000 Sobic001G273100--Sobic006G177000 Sobic001G273100--Sobic004G336700 Sobic010G191100 Sobic010G191100 Sobic001G273100--Sobic010G191100 Sobic001G534300 Sobic001G534300 Sobic001G273100--Sobic001G534300 Sobic001G273100--Sobic006G163600 Sobic001G273100--Sobic002G202500 Sobic001G273100--Sobic002G412400 Sobic001G273100--Sobic002G229800 Sobic003G325400 Sobic003G325400 Sobic001G273100--Sobic003G325400 Sobic002G412400--Sobic003G325400 Sobic002G412400--Sobic002G202500 Sobic009G070500 Sobic009G070500 Sobic002G412400--Sobic009G070500 Sobic002G412400--Sobic004G336700 Sobic003G047200 Sobic003G047200 Sobic002G412400--Sobic003G047200 Sobic002G412400--Sobic009G195600 Sobic002G412400--Sobic001G273100 Sobic010G246500 Sobic010G246500 Sobic002G412400--Sobic010G246500 Sobic007G000500 Sobic007G000500 Sobic002G412400--Sobic007G000500 Sobic006G278800 Sobic006G278800 Sobic002G229800--Sobic006G278800 Sobic004G155900 Sobic004G155900 Sobic002G229800--Sobic004G155900 Sobic002G229800--Sobic006G108000 Sobic001G474300 Sobic001G474300 Sobic002G229800--Sobic001G474300 Sobic002G229800--Sobic010G191100 Sobic002G229800--Sobic004G336700 Sobic008G145300 Sobic008G145300 Sobic002G229800--Sobic008G145300 Sobic009G254400 Sobic009G254400 Sobic002G229800--Sobic009G254400 Sobic003G301200 Sobic003G301200 Sobic002G229800--Sobic003G301200 Sobic006G108000--Sobic003G406500 Sobic001G331100 Sobic001G331100 Sobic006G108000--Sobic001G331100 Sobic004G115600 Sobic004G115600 Sobic006G108000--Sobic004G115600 Sobic008G163800 Sobic008G163800 Sobic006G108000--Sobic008G163800 Sobic006G245200 Sobic006G245200 Sobic006G108000--Sobic006G245200 Sobic002G221400 Sobic002G221400 Sobic006G108000--Sobic002G221400 Sobic006G108000--Sobic009G254400 Sobic003G040100 Sobic003G040100 Sobic006G108000--Sobic003G040100 Sobic006G108000--Sobic007G153300 Sobic003G406500--Sobic009G254400 Sobic003G406500--Sobic007G153300 Sobic003G406500--Sobic006G108000 Sobic003G406500--Sobic008G163800 Sobic003G006500 Sobic003G006500 Sobic003G406500--Sobic003G006500 Sobic001G263500 Sobic001G263500 Sobic003G406500--Sobic001G263500 Sobic003G406500--Sobic003G359200 Sobic003G406500--Sobic001G331100 Sobic003G406500--Sobic010G209800 Sobic006G163600--Sobic003G301200 Sobic010G189800 Sobic010G189800 Sobic006G163600--Sobic010G189800 Sobic007G081300 Sobic007G081300 Sobic006G163600--Sobic007G081300 Sobic006G163600--Sobic010G191100 Sobic006G163600--Sobic002G221400 Sobic006G278400 Sobic006G278400 Sobic006G163600--Sobic006G278400 Sobic008G137500 Sobic008G137500 Sobic006G163600--Sobic008G137500 Sobic006G163600--Sobic004G155900 Sobic006G247500 Sobic006G247500 Sobic006G163600--Sobic006G247500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.