Gene annotation
Transcriptome id Sobic.002G394200.1
Synonym Sb02g040960
Functional annotation expressed protein
UniProt C5X3F0
Pfam PF13920 PF08797 PF00271 PF00176
Panther DB PTHR10799
NCBI CDD KOG1001; Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
KEGG Orthology K15711; SMARCA3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3
Gene Ontology GO:0016818; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0008270zinc ion binding GO:0003676nucleic acid binding GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT5G05130 : DNA/RNA helicase protein
RAP-DB (Rice) LOC_Os07g44800.1 : SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed
MaizeGDB (Corn) Zm00025a048946
Brachypodium KQK14965
Barley HORVU2Hr1G025750.1 , HORVU2Hr1G025750.3 , HORVU2Hr1G025750.2 , HORVU7Hr1G086170.12
Wheat TraesCS2B02G170200 , TraesCS2D02G148900 , TraesCS2A02G145200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G025400 myosin heavy chain-related, putative, expressed -
2 Sobic.004G108400 heavy-metal-associated domain-containing protein, putative, expressed -
3 Sobic.002G420000 - K03654: ATP-dependent DNA helicase RecQ
4 Sobic.007G008300 WD domain, G-beta repeat domain containing protein, expressed K10751: chromatin assembly factor 1 subunit B
5 Sobic.009G257900 expressed protein -
6 Sobic.001G295400 protein kinase domain containing protein, expressed K02214: cell division control protein 7
7 Sobic.001G494300 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
8 Sobic.006G112800 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
9 Sobic.005G056800 FHA domain containing protein, putative, expressed -
10 Sobic.009G163700 fasciclin-like arabinogalactan protein, putative, expressed -
11 Sobic.003G320300 ZOS1-12 - C2H2 zinc finger protein, expressed -
12 Sobic.010G202100 expressed protein -
13 Sobic.002G286100 DUF292 domain containing protein, expressed -
14 Sobic.004G266800 ZF-HD protein dimerisation region containing protein, expressed -
15 Sobic.002G035500 CIN-like (ClassII) Subclade 13 TCP(PubMedID : 21444336)@basic helix-loop-helix (bHLH) transcription factor(PubMedID : 23915383)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
16 Sobic.006G155900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
17 Sobic.001G265300 acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
18 Sobic.010G209800 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
19 Sobic.007G211400 polygalacturonase inhibitor 2 precursor, putative, expressed -
20 Sobic.001G407100 PHD finger family protein, putative, expressed -


Gene co-expression network
sample Sobic002G394200 Sobic002G394200 Sobic009G025400 Sobic009G025400 Sobic002G394200--Sobic009G025400 Sobic004G108400 Sobic004G108400 Sobic002G394200--Sobic004G108400 Sobic002G420000 Sobic002G420000 Sobic002G394200--Sobic002G420000 Sobic007G008300 Sobic007G008300 Sobic002G394200--Sobic007G008300 Sobic009G257900 Sobic009G257900 Sobic002G394200--Sobic009G257900 Sobic001G295400 Sobic001G295400 Sobic002G394200--Sobic001G295400 Sobic001G494300 Sobic001G494300 Sobic002G394200--Sobic001G494300 Sobic006G112800 Sobic006G112800 Sobic002G394200--Sobic006G112800 Sobic005G056800 Sobic005G056800 Sobic002G394200--Sobic005G056800 Sobic009G025400--Sobic005G056800 Sobic010G202100 Sobic010G202100 Sobic009G025400--Sobic010G202100 Sobic009G025400--Sobic004G108400 Sobic009G025400--Sobic002G394200 Sobic009G025400--Sobic009G257900 Sobic009G025400--Sobic006G112800 Sobic003G414400 Sobic003G414400 Sobic009G025400--Sobic003G414400 Sobic001G284900 Sobic001G284900 Sobic009G025400--Sobic001G284900 Sobic003G083500 Sobic003G083500 Sobic009G025400--Sobic003G083500 Sobic001G054700 Sobic001G054700 Sobic004G108400--Sobic001G054700 Sobic006G221300 Sobic006G221300 Sobic004G108400--Sobic006G221300 Sobic009G143200 Sobic009G143200 Sobic004G108400--Sobic009G143200 Sobic001G452900 Sobic001G452900 Sobic004G108400--Sobic001G452900 Sobic004G108400--Sobic007G008300 Sobic009G127800 Sobic009G127800 Sobic004G108400--Sobic009G127800 Sobic007G162400 Sobic007G162400 Sobic004G108400--Sobic007G162400 Sobic002G050700 Sobic002G050700 Sobic004G108400--Sobic002G050700 Sobic009G101100 Sobic009G101100 Sobic004G108400--Sobic009G101100 Sobic002G420000--Sobic002G394200 Sobic002G420000--Sobic001G295400 Sobic002G420000--Sobic007G008300 Sobic010G030000 Sobic010G030000 Sobic002G420000--Sobic010G030000 Sobic008G131900 Sobic008G131900 Sobic002G420000--Sobic008G131900 Sobic010G222800 Sobic010G222800 Sobic002G420000--Sobic010G222800 Sobic002G286632 Sobic002G286632 Sobic002G420000--Sobic002G286632 Sobic002G286100 Sobic002G286100 Sobic002G420000--Sobic002G286100 Sobic002G112000 Sobic002G112000 Sobic002G420000--Sobic002G112000 Sobic007G008300--Sobic001G295400 Sobic009G172950 Sobic009G172950 Sobic007G008300--Sobic009G172950 Sobic007G008300--Sobic004G108400 Sobic001G105800 Sobic001G105800 Sobic007G008300--Sobic001G105800 Sobic003G320300 Sobic003G320300 Sobic007G008300--Sobic003G320300 Sobic009G184200 Sobic009G184200 Sobic007G008300--Sobic009G184200 Sobic007G007800 Sobic007G007800 Sobic007G008300--Sobic007G007800 Sobic001G377700 Sobic001G377700 Sobic007G008300--Sobic001G377700 Sobic003G055600 Sobic003G055600 Sobic007G008300--Sobic003G055600 Sobic004G317200 Sobic004G317200 Sobic009G257900--Sobic004G317200 Sobic009G257900--Sobic004G108400 Sobic009G257900--Sobic009G025400 Sobic005G129600 Sobic005G129600 Sobic009G257900--Sobic005G129600 Sobic004G313900 Sobic004G313900 Sobic009G257900--Sobic004G313900 Sobic004G329000 Sobic004G329000 Sobic009G257900--Sobic004G329000 Sobic001G390400 Sobic001G390400 Sobic009G257900--Sobic001G390400 Sobic004G357000 Sobic004G357000 Sobic009G257900--Sobic004G357000 Sobic004G113900 Sobic004G113900 Sobic009G257900--Sobic004G113900 Sobic001G295400--Sobic007G008300 Sobic001G295400--Sobic001G377700 Sobic005G110535 Sobic005G110535 Sobic001G295400--Sobic005G110535 Sobic001G295400--Sobic004G108400 Sobic002G290000 Sobic002G290000 Sobic001G295400--Sobic002G290000 Sobic003G183700 Sobic003G183700 Sobic001G295400--Sobic003G183700 Sobic001G295400--Sobic002G420000 Sobic001G295400--Sobic003G320300 Sobic006G195500 Sobic006G195500 Sobic001G295400--Sobic006G195500 Sobic006G155900 Sobic006G155900 Sobic001G494300--Sobic006G155900 Sobic008G020500 Sobic008G020500 Sobic001G494300--Sobic008G020500 Sobic004G198200 Sobic004G198200 Sobic001G494300--Sobic004G198200 Sobic003G040100 Sobic003G040100 Sobic001G494300--Sobic003G040100 Sobic007G019600 Sobic007G019600 Sobic001G494300--Sobic007G019600 Sobic001G427400 Sobic001G427400 Sobic001G494300--Sobic001G427400 Sobic003G047200 Sobic003G047200 Sobic001G494300--Sobic003G047200 Sobic009G163700 Sobic009G163700 Sobic001G494300--Sobic009G163700 Sobic007G130000 Sobic007G130000 Sobic001G494300--Sobic007G130000 Sobic004G271300 Sobic004G271300 Sobic006G112800--Sobic004G271300 Sobic003G032200 Sobic003G032200 Sobic006G112800--Sobic003G032200 Sobic006G112800--Sobic004G108400 Sobic002G204400 Sobic002G204400 Sobic006G112800--Sobic002G204400 Sobic002G296000 Sobic002G296000 Sobic006G112800--Sobic002G296000 Sobic007G027900 Sobic007G027900 Sobic006G112800--Sobic007G027900 Sobic001G540900 Sobic001G540900 Sobic006G112800--Sobic001G540900 Sobic007G168900 Sobic007G168900 Sobic006G112800--Sobic007G168900 Sobic006G112800--Sobic007G008300 Sobic005G056800--Sobic001G284900 Sobic005G056800--Sobic009G025400 Sobic005G056800--Sobic004G271300 Sobic005G056800--Sobic003G047200 Sobic005G056800--Sobic003G414400 Sobic010G215300 Sobic010G215300 Sobic005G056800--Sobic010G215300 Sobic005G056800--Sobic006G112800 Sobic005G056800--Sobic001G540900 Sobic005G056800--Sobic007G130000
Octagon: transcription factors


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