Gene annotation
Transcriptome id Sobic.001G295400.1,Sobic.001G295400.2
Synonym Sb01g028850
Functional annotation protein kinase domain containing protein, expressed
UniProt A0A1B6QLU9 , A0A1Z5S885
Pfam PF00069
Panther DB PTHR11909 PTHR11909:SF7
NCBI CDD KOG1167; Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination
KEGG Orthology K02214; cell division control protein 7
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT4G16970 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os10g41390.1 : protein kinase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051950
Brachypodium KQJ97825
Barley HORVU1Hr1G055510.19 , HORVU1Hr1G055510.18 , HORVU1Hr1G055510.14 , HORVU1Hr1G055510.13 , HORVU1Hr1G055510.11 , HORVU1Hr1G055510.10 , HORVU1Hr1G055510.7 , HORVU1Hr1G055510.6 , HORVU1Hr1G055510.5 , HORVU1Hr1G055510.4 , HORVU1Hr1G055510.3 , HORVU1Hr1G055510.2 , HORVU1Hr1G055510.1 , HORVU1Hr1G055510.9 , HORVU1Hr1G055510.8 , HORVU1Hr1G055510.22 , HORVU1Hr1G055510.23 , HORVU1Hr1G055510.20 , HORVU1Hr1G055510.21
Wheat TraesCS1A02G217400 , TraesCS1D02G219200 , TraesCS1B02G230600
Populus -


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cDNA sequences
Sobic.001G295400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G008300 WD domain, G-beta repeat domain containing protein, expressed K10751: chromatin assembly factor 1 subunit B
2 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
3 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
4 Sobic.004G108400 heavy-metal-associated domain-containing protein, putative, expressed -
5 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
6 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
7 Sobic.002G420000 - K03654: ATP-dependent DNA helicase RecQ
8 Sobic.003G320300 ZOS1-12 - C2H2 zinc finger protein, expressed -
9 Sobic.006G195500 DNA-binding protein, putative, expressed K10742: DNA replication ATP-dependent helicase Dna2
10 Sobic.003G055600 expressed protein -
11 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
12 Sobic.002G190000 ZOS9-05 - C2H2 zinc finger protein, expressed -
13 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
14 Sobic.001G427400 AAA-type ATPase family protein, putative, expressed K11269: CTF18, chromosome transmission fidelity protein 18
15 Sobic.004G321400 BRUSHY 1, putative, expressed -
16 Sobic.004G270800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD repeat-containing protein, putative, expressed K03363: cell division cycle 20, cofactor of APC complex
17 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
18 Sobic.009G143200 DUF630/DUF632 domains containing protein, putative, expressed -
19 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
20 Sobic.005G056800 FHA domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G295400 Sobic001G295400 Sobic007G008300 Sobic007G008300 Sobic001G295400--Sobic007G008300 Sobic001G377700 Sobic001G377700 Sobic001G295400--Sobic001G377700 Sobic005G110535 Sobic005G110535 Sobic001G295400--Sobic005G110535 Sobic004G108400 Sobic004G108400 Sobic001G295400--Sobic004G108400 Sobic002G290000 Sobic002G290000 Sobic001G295400--Sobic002G290000 Sobic003G183700 Sobic003G183700 Sobic001G295400--Sobic003G183700 Sobic002G420000 Sobic002G420000 Sobic001G295400--Sobic002G420000 Sobic003G320300 Sobic003G320300 Sobic001G295400--Sobic003G320300 Sobic006G195500 Sobic006G195500 Sobic001G295400--Sobic006G195500 Sobic007G008300--Sobic001G295400 Sobic009G172950 Sobic009G172950 Sobic007G008300--Sobic009G172950 Sobic007G008300--Sobic004G108400 Sobic001G105800 Sobic001G105800 Sobic007G008300--Sobic001G105800 Sobic007G008300--Sobic003G320300 Sobic009G184200 Sobic009G184200 Sobic007G008300--Sobic009G184200 Sobic007G007800 Sobic007G007800 Sobic007G008300--Sobic007G007800 Sobic007G008300--Sobic001G377700 Sobic003G055600 Sobic003G055600 Sobic007G008300--Sobic003G055600 Sobic001G377700--Sobic002G290000 Sobic002G021200 Sobic002G021200 Sobic001G377700--Sobic002G021200 Sobic001G377700--Sobic003G183700 Sobic001G377700--Sobic005G110535 Sobic001G377700--Sobic003G055600 Sobic001G377700--Sobic006G195500 Sobic007G187700 Sobic007G187700 Sobic001G377700--Sobic007G187700 Sobic007G125300 Sobic007G125300 Sobic001G377700--Sobic007G125300 Sobic005G157300 Sobic005G157300 Sobic001G377700--Sobic005G157300 Sobic005G110535--Sobic002G290000 Sobic009G087000 Sobic009G087000 Sobic005G110535--Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic005G110535--Sobic010G147700 Sobic008G129200 Sobic008G129200 Sobic005G110535--Sobic008G129200 Sobic005G110535--Sobic003G183700 Sobic003G369200 Sobic003G369200 Sobic005G110535--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic005G110535--Sobic004G321400 Sobic003G179500 Sobic003G179500 Sobic005G110535--Sobic003G179500 Sobic005G110535--Sobic001G377700 Sobic001G054700 Sobic001G054700 Sobic004G108400--Sobic001G054700 Sobic006G221300 Sobic006G221300 Sobic004G108400--Sobic006G221300 Sobic009G143200 Sobic009G143200 Sobic004G108400--Sobic009G143200 Sobic001G452900 Sobic001G452900 Sobic004G108400--Sobic001G452900 Sobic004G108400--Sobic007G008300 Sobic009G127800 Sobic009G127800 Sobic004G108400--Sobic009G127800 Sobic007G162400 Sobic007G162400 Sobic004G108400--Sobic007G162400 Sobic002G050700 Sobic002G050700 Sobic004G108400--Sobic002G050700 Sobic009G101100 Sobic009G101100 Sobic004G108400--Sobic009G101100 Sobic002G290000--Sobic005G110535 Sobic002G290000--Sobic001G377700 Sobic002G290000--Sobic007G125300 Sobic002G290000--Sobic009G087000 Sobic002G290000--Sobic010G147700 Sobic001G013400 Sobic001G013400 Sobic002G290000--Sobic001G013400 Sobic002G113400 Sobic002G113400 Sobic002G290000--Sobic002G113400 Sobic002G290000--Sobic008G129200 Sobic004G053900 Sobic004G053900 Sobic002G290000--Sobic004G053900 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic002G394200 Sobic002G394200 Sobic002G420000--Sobic002G394200 Sobic002G420000--Sobic001G295400 Sobic002G420000--Sobic007G008300 Sobic010G030000 Sobic010G030000 Sobic002G420000--Sobic010G030000 Sobic008G131900 Sobic008G131900 Sobic002G420000--Sobic008G131900 Sobic010G222800 Sobic010G222800 Sobic002G420000--Sobic010G222800 Sobic002G286632 Sobic002G286632 Sobic002G420000--Sobic002G286632 Sobic002G286100 Sobic002G286100 Sobic002G420000--Sobic002G286100 Sobic002G112000 Sobic002G112000 Sobic002G420000--Sobic002G112000 Sobic003G320300--Sobic007G008300 Sobic003G320300--Sobic004G108400 Sobic010G269700 Sobic010G269700 Sobic003G320300--Sobic010G269700 Sobic003G320300--Sobic001G452900 Sobic003G320300--Sobic009G172950 Sobic003G320300--Sobic005G157300 Sobic003G320300--Sobic001G295400 Sobic003G373900 Sobic003G373900 Sobic003G320300--Sobic003G373900 Sobic004G238801 Sobic004G238801 Sobic003G320300--Sobic004G238801 Sobic006G195500--Sobic006G051000 Sobic006G195500--Sobic003G183700 Sobic006G195500--Sobic010G103700 Sobic006G195500--Sobic001G377700 Sobic006G195500--Sobic009G087000 Sobic006G120600 Sobic006G120600 Sobic006G195500--Sobic006G120600 Sobic006G196600 Sobic006G196600 Sobic006G195500--Sobic006G196600 Sobic006G195500--Sobic005G110535 Sobic006G195500--Sobic003G179500
Octagon: transcription factors


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