Gene annotation
Transcriptome id Sobic.001G427400.2,Sobic.001G427400.1
Synonym CTF18, Sb01g040155
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt A0A1B6QP90
Pfam PF00004
Panther DB PTHR13779 PTHR13779:SF31
NCBI CDD KOG1969; DNA replication checkpoint protein CHL12/CTF18
KEGG Orthology K11269; CTF18, chromosome transmission fidelity protein 18
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G04730 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g15810.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a001717
Brachypodium KQK22437
Barley HORVU4Hr1G061060.24 , HORVU4Hr1G061060.20 , HORVU4Hr1G061060.21 , HORVU4Hr1G061060.22 , HORVU4Hr1G061060.23 , HORVU4Hr1G061060.11 , HORVU4Hr1G061060.10 , HORVU4Hr1G061060.13 , HORVU4Hr1G061060.12 , HORVU4Hr1G061060.15 , HORVU4Hr1G061060.14 , HORVU4Hr1G061060.17 , HORVU4Hr1G061060.16 , HORVU4Hr1G061060.19 , HORVU4Hr1G061060.18 , HORVU4Hr1G061060.5 , HORVU4Hr1G061060.4 , HORVU4Hr1G061060.7 , HORVU4Hr1G061060.6 , HORVU4Hr1G061060.1 , HORVU4Hr1G061060.3 , HORVU4Hr1G061060.2 , HORVU4Hr1G061060.9 , HORVU4Hr1G061060.8
Wheat TraesCS4A02G090100 , TraesCS4D02G214800 , TraesCS4B02G214100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G147500 cyclin, putative, expressed K18811: cyclin D5, plant
2 Sobic.001G494300 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
3 Sobic.003G414400 expressed protein -
4 Sobic.007G130000 STE_MEKK_ste11_MAP3K.21 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
5 Sobic.004G198200 expressed protein -
6 Sobic.001G284900 expressed protein -
7 Sobic.001G295400 protein kinase domain containing protein, expressed K02214: cell division control protein 7
8 Sobic.006G112800 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
9 Sobic.010G067900 ORC1 - Putative origin recognition complex subunit 1, expressed K02603: origin recognition complex subunit 1
10 Sobic.005G056800 FHA domain containing protein, putative, expressed -
11 Sobic.004G271300 DNA topoisomerase 2, putative, expressed K03164: DNA topoisomerase II
12 Sobic.007G008300 WD domain, G-beta repeat domain containing protein, expressed K10751: chromatin assembly factor 1 subunit B
13 Sobic.004G035300 - K10901: BLM, RECQL3, bloom syndrome protein
14 Sobic.008G020500 CDC45B - Putative DNA replication initiation protein, expressed K06628: cell division control protein 45
15 Sobic.006G155900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
16 Sobic.010G215300 cyclin-dependent kinase B2-1, putative, expressed K07760: cyclin-dependent kinase
17 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
18 Sobic.003G047200 expressed protein -
19 Sobic.001G540900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
20 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11


Gene co-expression network
sample Sobic001G427400 Sobic001G427400 Sobic008G147500 Sobic008G147500 Sobic001G427400--Sobic008G147500 Sobic001G494300 Sobic001G494300 Sobic001G427400--Sobic001G494300 Sobic003G414400 Sobic003G414400 Sobic001G427400--Sobic003G414400 Sobic007G130000 Sobic007G130000 Sobic001G427400--Sobic007G130000 Sobic004G198200 Sobic004G198200 Sobic001G427400--Sobic004G198200 Sobic001G284900 Sobic001G284900 Sobic001G427400--Sobic001G284900 Sobic001G295400 Sobic001G295400 Sobic001G427400--Sobic001G295400 Sobic006G112800 Sobic006G112800 Sobic001G427400--Sobic006G112800 Sobic010G067900 Sobic010G067900 Sobic001G427400--Sobic010G067900 Sobic008G147500--Sobic001G427400 Sobic008G147500--Sobic010G067900 Sobic008G147500--Sobic003G414400 Sobic008G147500--Sobic001G284900 Sobic004G237300 Sobic004G237300 Sobic008G147500--Sobic004G237300 Sobic008G147500--Sobic004G198200 Sobic006G029300 Sobic006G029300 Sobic008G147500--Sobic006G029300 Sobic008G147500--Sobic006G112800 Sobic004G271300 Sobic004G271300 Sobic008G147500--Sobic004G271300 Sobic006G155900 Sobic006G155900 Sobic001G494300--Sobic006G155900 Sobic008G020500 Sobic008G020500 Sobic001G494300--Sobic008G020500 Sobic001G494300--Sobic004G198200 Sobic003G040100 Sobic003G040100 Sobic001G494300--Sobic003G040100 Sobic007G019600 Sobic007G019600 Sobic001G494300--Sobic007G019600 Sobic001G494300--Sobic001G427400 Sobic003G047200 Sobic003G047200 Sobic001G494300--Sobic003G047200 Sobic009G163700 Sobic009G163700 Sobic001G494300--Sobic009G163700 Sobic001G494300--Sobic007G130000 Sobic003G414400--Sobic001G284900 Sobic010G215300 Sobic010G215300 Sobic003G414400--Sobic010G215300 Sobic001G098900 Sobic001G098900 Sobic003G414400--Sobic001G098900 Sobic010G202100 Sobic010G202100 Sobic003G414400--Sobic010G202100 Sobic003G414400--Sobic003G047200 Sobic010G234800 Sobic010G234800 Sobic003G414400--Sobic010G234800 Sobic003G414400--Sobic006G155900 Sobic001G070200 Sobic001G070200 Sobic003G414400--Sobic001G070200 Sobic003G414400--Sobic004G271300 Sobic007G130000--Sobic004G198200 Sobic007G130000--Sobic001G427400 Sobic007G130000--Sobic008G020500 Sobic005G056800 Sobic005G056800 Sobic007G130000--Sobic005G056800 Sobic007G130000--Sobic001G494300 Sobic007G130000--Sobic006G155900 Sobic007G130000--Sobic003G040100 Sobic002G380700 Sobic002G380700 Sobic007G130000--Sobic002G380700 Sobic007G130000--Sobic001G284900 Sobic004G198200--Sobic008G020500 Sobic004G198200--Sobic006G155900 Sobic009G190400 Sobic009G190400 Sobic004G198200--Sobic009G190400 Sobic004G198200--Sobic003G040100 Sobic004G198200--Sobic001G070200 Sobic004G198200--Sobic007G130000 Sobic004G198200--Sobic001G494300 Sobic004G198200--Sobic003G414400 Sobic004G198200--Sobic001G427400 Sobic001G284900--Sobic003G414400 Sobic001G284900--Sobic005G056800 Sobic001G284900--Sobic003G047200 Sobic001G284900--Sobic010G215300 Sobic001G284900--Sobic004G271300 Sobic009G025400 Sobic009G025400 Sobic001G284900--Sobic009G025400 Sobic001G284900--Sobic001G427400 Sobic010G017400 Sobic010G017400 Sobic001G284900--Sobic010G017400 Sobic001G284900--Sobic001G098900 Sobic007G008300 Sobic007G008300 Sobic001G295400--Sobic007G008300 Sobic001G377700 Sobic001G377700 Sobic001G295400--Sobic001G377700 Sobic005G110535 Sobic005G110535 Sobic001G295400--Sobic005G110535 Sobic004G108400 Sobic004G108400 Sobic001G295400--Sobic004G108400 Sobic002G290000 Sobic002G290000 Sobic001G295400--Sobic002G290000 Sobic003G183700 Sobic003G183700 Sobic001G295400--Sobic003G183700 Sobic002G420000 Sobic002G420000 Sobic001G295400--Sobic002G420000 Sobic003G320300 Sobic003G320300 Sobic001G295400--Sobic003G320300 Sobic006G195500 Sobic006G195500 Sobic001G295400--Sobic006G195500 Sobic006G112800--Sobic004G271300 Sobic003G032200 Sobic003G032200 Sobic006G112800--Sobic003G032200 Sobic006G112800--Sobic004G108400 Sobic002G204400 Sobic002G204400 Sobic006G112800--Sobic002G204400 Sobic002G296000 Sobic002G296000 Sobic006G112800--Sobic002G296000 Sobic007G027900 Sobic007G027900 Sobic006G112800--Sobic007G027900 Sobic001G540900 Sobic001G540900 Sobic006G112800--Sobic001G540900 Sobic007G168900 Sobic007G168900 Sobic006G112800--Sobic007G168900 Sobic006G112800--Sobic007G008300 Sobic002G191000 Sobic002G191000 Sobic010G067900--Sobic002G191000 Sobic010G067900--Sobic008G147500 Sobic010G147700 Sobic010G147700 Sobic010G067900--Sobic010G147700 Sobic001G029800 Sobic001G029800 Sobic010G067900--Sobic001G029800 Sobic003G118100 Sobic003G118100 Sobic010G067900--Sobic003G118100 Sobic010G067900--Sobic006G029300 Sobic009G087000 Sobic009G087000 Sobic010G067900--Sobic009G087000 Sobic004G271500 Sobic004G271500 Sobic010G067900--Sobic004G271500 Sobic010G103700 Sobic010G103700 Sobic010G067900--Sobic010G103700
Octagon: transcription factors


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