Gene annotation
Transcriptome id Sobic.004G035300.1
Synonym Sb04g003070, RECQ4A, ATSGS1, ATRECQ4A
Functional annotation -
UniProt C5XUI1
Pfam PF00570 PF16124 PF00270 PF09382 PF00271
Panther DB PTHR13710 PTHR13710:SF94
NCBI CDD -
KEGG Orthology K10901; BLM, RECQL3, bloom syndrome protein
Gene Ontology GO:0005622; intracellular GO:0003676nucleic acid binding GO:0005524ATP binding GO:0006281DNA repair GO:0006260DNA replication


Orthologs (automatic annotation)
TAIR AT1G10930 : DNA helicase (RECQl4A)
RAP-DB (Rice) LOC_Os04g35420.1 : helicase conserved C-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018923
Brachypodium KQJ82682
Barley HORVU2Hr1G075870.39 , HORVU2Hr1G075870.21 , HORVU2Hr1G075870.23 , HORVU2Hr1G075870.28 , HORVU2Hr1G075870.29 , HORVU2Hr1G075870.15 , HORVU2Hr1G075870.14 , HORVU2Hr1G075870.17 , HORVU2Hr1G075870.16 , HORVU2Hr1G075870.11 , HORVU2Hr1G075870.13 , HORVU2Hr1G075870.12 , HORVU2Hr1G075870.19 , HORVU2Hr1G075870.18 , HORVU2Hr1G075870.10 , HORVU2Hr1G075870.50 , HORVU2Hr1G075870.20 , HORVU2Hr1G075870.22 , HORVU2Hr1G075870.24 , HORVU2Hr1G075870.25 , HORVU2Hr1G075870.26 , HORVU2Hr1G075870.27 , HORVU2Hr1G075870.46 , HORVU2Hr1G075870.47 , HORVU2Hr1G075870.44 , HORVU2Hr1G075870.45 , HORVU2Hr1G075870.42 , HORVU2Hr1G075870.43 , HORVU2Hr1G075870.40 , HORVU2Hr1G075870.41 , HORVU2Hr1G075870.48 , HORVU2Hr1G075870.49 , HORVU2Hr1G075870.33 , HORVU2Hr1G075870.31 , HORVU2Hr1G075870.30 , HORVU2Hr1G075870.37 , HORVU2Hr1G075870.36 , HORVU2Hr1G075870.35 , HORVU2Hr1G075870.34 , HORVU2Hr1G075870.38 , HORVU2Hr1G075870.1 , HORVU2Hr1G075870.3 , HORVU2Hr1G075870.2 , HORVU2Hr1G075870.5 , HORVU2Hr1G075870.4 , HORVU2Hr1G075870.7 , HORVU2Hr1G075870.6 , HORVU2Hr1G075870.9 , HORVU2Hr1G075870.8
Wheat TraesCS2D02G303500 , TraesCS2D02G303500 , TraesCS2D02G303500 , TraesCS2A02G304900 , TraesCS2A02G304900 , TraesCS2A02G304900 , TraesCS2B02G321700 , TraesCS2B02G321700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G067900 ORC1 - Putative origin recognition complex subunit 1, expressed K02603: origin recognition complex subunit 1
2 Sobic.003G118100 EMB3013, putative, expressed K17545: serine/threonine-protein kinase ULK4
3 Sobic.001G109700 expressed protein K19001: HELLS, ATP-dependent DNA helicase
4 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
5 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
6 Sobic.003G043900 kinesin-4, putative, expressed K10406: kinesin family member C2/C3
7 Sobic.001G427400 AAA-type ATPase family protein, putative, expressed K11269: CTF18, chromosome transmission fidelity protein 18
8 Sobic.004G271300 DNA topoisomerase 2, putative, expressed K03164: DNA topoisomerase II
9 Sobic.008G148000 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
10 Sobic.006G035600 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
11 Sobic.007G125300 BRCA1 C Terminus domain containing protein, expressed -
12 Sobic.010G008900 kinesin motor domain containing protein, expressed K11498: centromeric protein E
13 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
14 Sobic.005G056800 FHA domain containing protein, putative, expressed -
15 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
16 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
17 Sobic.001G284900 expressed protein -
18 Sobic.003G314900 flap endonuclease, putative, expressed K10746: exonuclease 1
19 Sobic.004G156200 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed K02324: DNA polymerase epsilon subunit 1
20 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2


Gene co-expression network
sample Sobic004G035300 Sobic004G035300 Sobic010G067900 Sobic010G067900 Sobic004G035300--Sobic010G067900 Sobic003G118100 Sobic003G118100 Sobic004G035300--Sobic003G118100 Sobic001G109700 Sobic001G109700 Sobic004G035300--Sobic001G109700 Sobic005G000500 Sobic005G000500 Sobic004G035300--Sobic005G000500 Sobic005G110535 Sobic005G110535 Sobic004G035300--Sobic005G110535 Sobic003G043900 Sobic003G043900 Sobic004G035300--Sobic003G043900 Sobic001G427400 Sobic001G427400 Sobic004G035300--Sobic001G427400 Sobic004G271300 Sobic004G271300 Sobic004G035300--Sobic004G271300 Sobic008G148000 Sobic008G148000 Sobic004G035300--Sobic008G148000 Sobic002G191000 Sobic002G191000 Sobic010G067900--Sobic002G191000 Sobic008G147500 Sobic008G147500 Sobic010G067900--Sobic008G147500 Sobic010G147700 Sobic010G147700 Sobic010G067900--Sobic010G147700 Sobic001G029800 Sobic001G029800 Sobic010G067900--Sobic001G029800 Sobic010G067900--Sobic003G118100 Sobic006G029300 Sobic006G029300 Sobic010G067900--Sobic006G029300 Sobic009G087000 Sobic009G087000 Sobic010G067900--Sobic009G087000 Sobic004G271500 Sobic004G271500 Sobic010G067900--Sobic004G271500 Sobic010G103700 Sobic010G103700 Sobic010G067900--Sobic010G103700 Sobic006G035600 Sobic006G035600 Sobic003G118100--Sobic006G035600 Sobic003G118100--Sobic002G191000 Sobic010G008900 Sobic010G008900 Sobic003G118100--Sobic010G008900 Sobic003G118100--Sobic008G148000 Sobic003G118100--Sobic005G000500 Sobic007G125300 Sobic007G125300 Sobic003G118100--Sobic007G125300 Sobic001G131300 Sobic001G131300 Sobic003G118100--Sobic001G131300 Sobic003G294500 Sobic003G294500 Sobic003G118100--Sobic003G294500 Sobic003G118100--Sobic001G029800 Sobic001G109700--Sobic003G043900 Sobic001G109700--Sobic007G125300 Sobic001G109700--Sobic005G110535 Sobic001G109700--Sobic008G148000 Sobic002G296000 Sobic002G296000 Sobic001G109700--Sobic002G296000 Sobic001G109700--Sobic005G000500 Sobic001G304800 Sobic001G304800 Sobic001G109700--Sobic001G304800 Sobic004G156200 Sobic004G156200 Sobic001G109700--Sobic004G156200 Sobic002G290000 Sobic002G290000 Sobic001G109700--Sobic002G290000 Sobic007G168900 Sobic007G168900 Sobic005G000500--Sobic007G168900 Sobic001G170800 Sobic001G170800 Sobic005G000500--Sobic001G170800 Sobic005G000500--Sobic008G148000 Sobic003G444100 Sobic003G444100 Sobic005G000500--Sobic003G444100 Sobic003G314900 Sobic003G314900 Sobic005G000500--Sobic003G314900 Sobic005G000500--Sobic004G271300 Sobic005G144600 Sobic005G144600 Sobic005G000500--Sobic005G144600 Sobic005G000500--Sobic010G008900 Sobic001G177900 Sobic001G177900 Sobic005G000500--Sobic001G177900 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic008G129200 Sobic008G129200 Sobic005G110535--Sobic008G129200 Sobic003G183700 Sobic003G183700 Sobic005G110535--Sobic003G183700 Sobic003G369200 Sobic003G369200 Sobic005G110535--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic005G110535--Sobic004G321400 Sobic003G179500 Sobic003G179500 Sobic005G110535--Sobic003G179500 Sobic001G377700 Sobic001G377700 Sobic005G110535--Sobic001G377700 Sobic003G043900--Sobic001G109700 Sobic003G043900--Sobic002G296000 Sobic003G043900--Sobic007G125300 Sobic003G043900--Sobic001G304800 Sobic003G043900--Sobic005G110535 Sobic009G146250 Sobic009G146250 Sobic003G043900--Sobic009G146250 Sobic003G008700 Sobic003G008700 Sobic003G043900--Sobic003G008700 Sobic003G043900--Sobic004G156200 Sobic009G101100 Sobic009G101100 Sobic003G043900--Sobic009G101100 Sobic001G427400--Sobic008G147500 Sobic001G494300 Sobic001G494300 Sobic001G427400--Sobic001G494300 Sobic003G414400 Sobic003G414400 Sobic001G427400--Sobic003G414400 Sobic007G130000 Sobic007G130000 Sobic001G427400--Sobic007G130000 Sobic004G198200 Sobic004G198200 Sobic001G427400--Sobic004G198200 Sobic001G284900 Sobic001G284900 Sobic001G427400--Sobic001G284900 Sobic001G295400 Sobic001G295400 Sobic001G427400--Sobic001G295400 Sobic006G112800 Sobic006G112800 Sobic001G427400--Sobic006G112800 Sobic001G427400--Sobic010G067900 Sobic004G271300--Sobic007G168900 Sobic004G271300--Sobic005G000500 Sobic003G260700 Sobic003G260700 Sobic004G271300--Sobic003G260700 Sobic004G271300--Sobic001G170800 Sobic005G005700 Sobic005G005700 Sobic004G271300--Sobic005G005700 Sobic001G398400 Sobic001G398400 Sobic004G271300--Sobic001G398400 Sobic008G006800 Sobic008G006800 Sobic004G271300--Sobic008G006800 Sobic004G271300--Sobic001G177900 Sobic004G271300--Sobic005G144600 Sobic008G148000--Sobic005G000500 Sobic002G204400 Sobic002G204400 Sobic008G148000--Sobic002G204400 Sobic008G148000--Sobic001G170800 Sobic008G148000--Sobic010G008900 Sobic008G148000--Sobic007G168900 Sobic008G148000--Sobic004G271300 Sobic008G148000--Sobic003G444100 Sobic008G148000--Sobic003G314900 Sobic009G184200 Sobic009G184200 Sobic008G148000--Sobic009G184200
Octagon: transcription factors


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