Gene annotation
Transcriptome id Sobic.008G147500.1
Synonym 1, ATCYCD1, Sb08g019760, CYCD1
Functional annotation cyclin, putative, expressed
UniProt C5YQV6
Pfam PF02984 PF00134
Panther DB PTHR10177 PTHR10177:SF225
NCBI CDD -
KEGG Orthology K18811; cyclin D5, plant
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT1G70210 : CYCLIN D1;1
RAP-DB (Rice) LOC_Os12g39830.1 : cyclin, putative, expressed
MaizeGDB (Corn) Zm00025a004482 , Zm00025a025191
Brachypodium KQJ86074
Barley HORVU5Hr1G018180.8 , HORVU5Hr1G018180.3 , HORVU5Hr1G018180.2 , HORVU5Hr1G018180.1 , HORVU5Hr1G018180.7 , HORVU5Hr1G018180.6 , HORVU5Hr1G018180.13 , HORVU5Hr1G018180.12 , HORVU5Hr1G018180.11 , HORVU5Hr1G018180.10 , HORVU5Hr1G018180.14
Wheat TraesCS5D02G080600 , TraesCS5A02G068600 , TraesCS5B02G075000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G427400 AAA-type ATPase family protein, putative, expressed K11269: CTF18, chromosome transmission fidelity protein 18
2 Sobic.010G067900 ORC1 - Putative origin recognition complex subunit 1, expressed K02603: origin recognition complex subunit 1
3 Sobic.003G414400 expressed protein -
4 Sobic.001G284900 expressed protein -
5 Sobic.004G237300 PCF-like (ClassI) Subclade 5 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP-domain protein, putative, expressed -
6 Sobic.004G198200 expressed protein -
7 Sobic.006G029300 expressed protein K15505: DNA repair protein RAD5
8 Sobic.006G112800 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
9 Sobic.004G271300 DNA topoisomerase 2, putative, expressed K03164: DNA topoisomerase II
10 Sobic.001G494300 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
11 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
12 Sobic.007G130000 STE_MEKK_ste11_MAP3K.21 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
13 Sobic.003G047200 expressed protein -
14 Sobic.001G029800 expressed protein -
15 Sobic.003G294500 dynamin family protein, putative, expressed -
16 Sobic.008G020500 CDC45B - Putative DNA replication initiation protein, expressed K06628: cell division control protein 45
17 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
18 Sobic.003G387600 expressed protein K10750: chromatin assembly factor 1 subunit A
19 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
20 Sobic.001G540900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta


Gene co-expression network
sample Sobic008G147500 Sobic008G147500 Sobic001G427400 Sobic001G427400 Sobic008G147500--Sobic001G427400 Sobic010G067900 Sobic010G067900 Sobic008G147500--Sobic010G067900 Sobic003G414400 Sobic003G414400 Sobic008G147500--Sobic003G414400 Sobic001G284900 Sobic001G284900 Sobic008G147500--Sobic001G284900 Sobic004G237300 Sobic004G237300 Sobic008G147500--Sobic004G237300 Sobic004G198200 Sobic004G198200 Sobic008G147500--Sobic004G198200 Sobic006G029300 Sobic006G029300 Sobic008G147500--Sobic006G029300 Sobic006G112800 Sobic006G112800 Sobic008G147500--Sobic006G112800 Sobic004G271300 Sobic004G271300 Sobic008G147500--Sobic004G271300 Sobic001G427400--Sobic008G147500 Sobic001G494300 Sobic001G494300 Sobic001G427400--Sobic001G494300 Sobic001G427400--Sobic003G414400 Sobic007G130000 Sobic007G130000 Sobic001G427400--Sobic007G130000 Sobic001G427400--Sobic004G198200 Sobic001G427400--Sobic001G284900 Sobic001G295400 Sobic001G295400 Sobic001G427400--Sobic001G295400 Sobic001G427400--Sobic006G112800 Sobic001G427400--Sobic010G067900 Sobic002G191000 Sobic002G191000 Sobic010G067900--Sobic002G191000 Sobic010G067900--Sobic008G147500 Sobic010G147700 Sobic010G147700 Sobic010G067900--Sobic010G147700 Sobic001G029800 Sobic001G029800 Sobic010G067900--Sobic001G029800 Sobic003G118100 Sobic003G118100 Sobic010G067900--Sobic003G118100 Sobic010G067900--Sobic006G029300 Sobic009G087000 Sobic009G087000 Sobic010G067900--Sobic009G087000 Sobic004G271500 Sobic004G271500 Sobic010G067900--Sobic004G271500 Sobic010G103700 Sobic010G103700 Sobic010G067900--Sobic010G103700 Sobic003G414400--Sobic001G284900 Sobic010G215300 Sobic010G215300 Sobic003G414400--Sobic010G215300 Sobic001G098900 Sobic001G098900 Sobic003G414400--Sobic001G098900 Sobic010G202100 Sobic010G202100 Sobic003G414400--Sobic010G202100 Sobic003G047200 Sobic003G047200 Sobic003G414400--Sobic003G047200 Sobic010G234800 Sobic010G234800 Sobic003G414400--Sobic010G234800 Sobic006G155900 Sobic006G155900 Sobic003G414400--Sobic006G155900 Sobic001G070200 Sobic001G070200 Sobic003G414400--Sobic001G070200 Sobic003G414400--Sobic004G271300 Sobic001G284900--Sobic003G414400 Sobic005G056800 Sobic005G056800 Sobic001G284900--Sobic005G056800 Sobic001G284900--Sobic003G047200 Sobic001G284900--Sobic010G215300 Sobic001G284900--Sobic004G271300 Sobic009G025400 Sobic009G025400 Sobic001G284900--Sobic009G025400 Sobic001G284900--Sobic001G427400 Sobic010G017400 Sobic010G017400 Sobic001G284900--Sobic010G017400 Sobic001G284900--Sobic001G098900 Sobic007G019600 Sobic007G019600 Sobic004G237300--Sobic007G019600 Sobic002G035500 Sobic002G035500 Sobic004G237300--Sobic002G035500 Sobic004G237300--Sobic001G494300 Sobic004G237300--Sobic003G414400 Sobic004G237300--Sobic008G147500 Sobic004G237300--Sobic006G155900 Sobic004G237300--Sobic003G047200 Sobic003G282600 Sobic003G282600 Sobic004G237300--Sobic003G282600 Sobic004G237300--Sobic010G215300 Sobic008G020500 Sobic008G020500 Sobic004G198200--Sobic008G020500 Sobic004G198200--Sobic006G155900 Sobic009G190400 Sobic009G190400 Sobic004G198200--Sobic009G190400 Sobic003G040100 Sobic003G040100 Sobic004G198200--Sobic003G040100 Sobic004G198200--Sobic001G070200 Sobic004G198200--Sobic007G130000 Sobic004G198200--Sobic001G494300 Sobic004G198200--Sobic003G414400 Sobic004G198200--Sobic001G427400 Sobic006G029300--Sobic010G147700 Sobic006G029300--Sobic009G087000 Sobic007G168900 Sobic007G168900 Sobic006G029300--Sobic007G168900 Sobic003G369200 Sobic003G369200 Sobic006G029300--Sobic003G369200 Sobic003G294500 Sobic003G294500 Sobic006G029300--Sobic003G294500 Sobic003G201000 Sobic003G201000 Sobic006G029300--Sobic003G201000 Sobic006G029300--Sobic001G029800 Sobic005G144600 Sobic005G144600 Sobic006G029300--Sobic005G144600 Sobic005G110535 Sobic005G110535 Sobic006G029300--Sobic005G110535 Sobic006G112800--Sobic004G271300 Sobic003G032200 Sobic003G032200 Sobic006G112800--Sobic003G032200 Sobic004G108400 Sobic004G108400 Sobic006G112800--Sobic004G108400 Sobic002G204400 Sobic002G204400 Sobic006G112800--Sobic002G204400 Sobic002G296000 Sobic002G296000 Sobic006G112800--Sobic002G296000 Sobic007G027900 Sobic007G027900 Sobic006G112800--Sobic007G027900 Sobic001G540900 Sobic001G540900 Sobic006G112800--Sobic001G540900 Sobic006G112800--Sobic007G168900 Sobic007G008300 Sobic007G008300 Sobic006G112800--Sobic007G008300 Sobic004G271300--Sobic007G168900 Sobic005G000500 Sobic005G000500 Sobic004G271300--Sobic005G000500 Sobic003G260700 Sobic003G260700 Sobic004G271300--Sobic003G260700 Sobic001G170800 Sobic001G170800 Sobic004G271300--Sobic001G170800 Sobic005G005700 Sobic005G005700 Sobic004G271300--Sobic005G005700 Sobic001G398400 Sobic001G398400 Sobic004G271300--Sobic001G398400 Sobic008G006800 Sobic008G006800 Sobic004G271300--Sobic008G006800 Sobic001G177900 Sobic001G177900 Sobic004G271300--Sobic001G177900 Sobic004G271300--Sobic005G144600
Octagon: transcription factors


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