Gene annotation
Transcriptome id Sobic.001G494300.2,Sobic.001G494300.1
Synonym TOP3A, Sb01g046210
Functional annotation DNA topoisomerase 3 protein, putative, expressed
UniProt A0A1B6QQB9
Pfam PF01396 PF06839 PF01751 PF01131
Panther DB PTHR11390 PTHR11390:SF21
NCBI CDD -
KEGG Orthology K03165; DNA topoisomerase III
Gene Ontology GO:0006265; DNA topological change GO:0005694chromosome GO:0003916DNA topoisomerase activity GO:0003677DNA binding GO:0008270zinc ion binding GO:0003917DNA topoisomerase type I (single strand cut, ATP-independent) activity


Orthologs (automatic annotation)
TAIR AT5G63920 : topoisomerase 3alpha
RAP-DB (Rice) LOC_Os03g06900.1 : DNA topoisomerase 3 protein, putative, expressed
MaizeGDB (Corn) Zm00025a000804
Brachypodium PNT78131 , PNT78130
Barley -
Wheat TraesCS4B02G280400 , TraesCS4A02G023100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G155900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
2 Sobic.008G020500 CDC45B - Putative DNA replication initiation protein, expressed K06628: cell division control protein 45
3 Sobic.004G198200 expressed protein -
4 Sobic.003G040100 PHD-finger domain containing protein, putative, expressed K11380: NuA3 HAT complex component NTO1
5 Sobic.007G019600 expressed protein -
6 Sobic.001G427400 AAA-type ATPase family protein, putative, expressed K11269: CTF18, chromosome transmission fidelity protein 18
7 Sobic.003G047200 expressed protein -
8 Sobic.009G163700 fasciclin-like arabinogalactan protein, putative, expressed -
9 Sobic.007G130000 STE_MEKK_ste11_MAP3K.21 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
10 Sobic.005G056800 FHA domain containing protein, putative, expressed -
11 Sobic.003G414400 expressed protein -
12 Sobic.007G008300 WD domain, G-beta repeat domain containing protein, expressed K10751: chromatin assembly factor 1 subunit B
13 Sobic.004G237300 PCF-like (ClassI) Subclade 5 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP-domain protein, putative, expressed -
14 Sobic.009G190400 expressed protein -
15 Sobic.002G394200 expressed protein K15711: SMARCA3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3
16 Sobic.002G035500 CIN-like (ClassII) Subclade 13 TCP(PubMedID : 21444336)@basic helix-loop-helix (bHLH) transcription factor(PubMedID : 23915383)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
17 Sobic.001G284900 expressed protein -
18 Sobic.009G025400 myosin heavy chain-related, putative, expressed -
19 Sobic.006G112800 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
20 Sobic.010G209800 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I


Gene co-expression network
sample Sobic001G494300 Sobic001G494300 Sobic006G155900 Sobic006G155900 Sobic001G494300--Sobic006G155900 Sobic008G020500 Sobic008G020500 Sobic001G494300--Sobic008G020500 Sobic004G198200 Sobic004G198200 Sobic001G494300--Sobic004G198200 Sobic003G040100 Sobic003G040100 Sobic001G494300--Sobic003G040100 Sobic007G019600 Sobic007G019600 Sobic001G494300--Sobic007G019600 Sobic001G427400 Sobic001G427400 Sobic001G494300--Sobic001G427400 Sobic003G047200 Sobic003G047200 Sobic001G494300--Sobic003G047200 Sobic009G163700 Sobic009G163700 Sobic001G494300--Sobic009G163700 Sobic007G130000 Sobic007G130000 Sobic001G494300--Sobic007G130000 Sobic009G190400 Sobic009G190400 Sobic006G155900--Sobic009G190400 Sobic006G155900--Sobic004G198200 Sobic006G155900--Sobic003G040100 Sobic006G155900--Sobic001G494300 Sobic006G155900--Sobic008G020500 Sobic006G155900--Sobic003G047200 Sobic003G414400 Sobic003G414400 Sobic006G155900--Sobic003G414400 Sobic001G070200 Sobic001G070200 Sobic006G155900--Sobic001G070200 Sobic001G331100 Sobic001G331100 Sobic006G155900--Sobic001G331100 Sobic008G020500--Sobic004G198200 Sobic008G020500--Sobic003G040100 Sobic008G020500--Sobic006G155900 Sobic008G020500--Sobic001G494300 Sobic008G020500--Sobic009G190400 Sobic008G020500--Sobic007G130000 Sobic008G020500--Sobic001G070200 Sobic008G020500--Sobic001G331100 Sobic004G156600 Sobic004G156600 Sobic008G020500--Sobic004G156600 Sobic004G198200--Sobic008G020500 Sobic004G198200--Sobic006G155900 Sobic004G198200--Sobic009G190400 Sobic004G198200--Sobic003G040100 Sobic004G198200--Sobic001G070200 Sobic004G198200--Sobic007G130000 Sobic004G198200--Sobic001G494300 Sobic004G198200--Sobic003G414400 Sobic004G198200--Sobic001G427400 Sobic003G040100--Sobic009G190400 Sobic003G040100--Sobic008G020500 Sobic003G040100--Sobic006G155900 Sobic003G040100--Sobic004G198200 Sobic003G040100--Sobic004G156600 Sobic003G040100--Sobic001G494300 Sobic003G390300 Sobic003G390300 Sobic003G040100--Sobic003G390300 Sobic003G415500 Sobic003G415500 Sobic003G040100--Sobic003G415500 Sobic004G061600 Sobic004G061600 Sobic003G040100--Sobic004G061600 Sobic002G035500 Sobic002G035500 Sobic007G019600--Sobic002G035500 Sobic004G237300 Sobic004G237300 Sobic007G019600--Sobic004G237300 Sobic007G019600--Sobic001G494300 Sobic003G282600 Sobic003G282600 Sobic007G019600--Sobic003G282600 Sobic007G019600--Sobic006G155900 Sobic007G162000 Sobic007G162000 Sobic007G019600--Sobic007G162000 Sobic010G202100 Sobic010G202100 Sobic007G019600--Sobic010G202100 Sobic005G129600 Sobic005G129600 Sobic007G019600--Sobic005G129600 Sobic009G025400 Sobic009G025400 Sobic007G019600--Sobic009G025400 Sobic008G147500 Sobic008G147500 Sobic001G427400--Sobic008G147500 Sobic001G427400--Sobic001G494300 Sobic001G427400--Sobic003G414400 Sobic001G427400--Sobic007G130000 Sobic001G427400--Sobic004G198200 Sobic001G284900 Sobic001G284900 Sobic001G427400--Sobic001G284900 Sobic001G295400 Sobic001G295400 Sobic001G427400--Sobic001G295400 Sobic006G112800 Sobic006G112800 Sobic001G427400--Sobic006G112800 Sobic010G067900 Sobic010G067900 Sobic001G427400--Sobic010G067900 Sobic010G234800 Sobic010G234800 Sobic003G047200--Sobic010G234800 Sobic001G098900 Sobic001G098900 Sobic003G047200--Sobic001G098900 Sobic010G215300 Sobic010G215300 Sobic003G047200--Sobic010G215300 Sobic001G458900 Sobic001G458900 Sobic003G047200--Sobic001G458900 Sobic003G047200--Sobic001G284900 Sobic003G047200--Sobic003G414400 Sobic003G047200--Sobic006G155900 Sobic003G047200--Sobic010G202100 Sobic002G279300 Sobic002G279300 Sobic003G047200--Sobic002G279300 Sobic009G163700--Sobic001G494300 Sobic002G394200 Sobic002G394200 Sobic009G163700--Sobic002G394200 Sobic009G163700--Sobic002G035500 Sobic009G163700--Sobic006G155900 Sobic009G163700--Sobic003G040100 Sobic009G257900 Sobic009G257900 Sobic009G163700--Sobic009G257900 Sobic007G153300 Sobic007G153300 Sobic009G163700--Sobic007G153300 Sobic009G163700--Sobic007G162000 Sobic009G163700--Sobic007G019600 Sobic007G130000--Sobic004G198200 Sobic007G130000--Sobic001G427400 Sobic007G130000--Sobic008G020500 Sobic005G056800 Sobic005G056800 Sobic007G130000--Sobic005G056800 Sobic007G130000--Sobic001G494300 Sobic007G130000--Sobic006G155900 Sobic007G130000--Sobic003G040100 Sobic002G380700 Sobic002G380700 Sobic007G130000--Sobic002G380700 Sobic007G130000--Sobic001G284900
Octagon: transcription factors


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