Gene annotation
Transcriptome id Sobic.003G040100.1
Synonym Sb03g003580
Functional annotation PHD-finger domain containing protein, putative, expressed
UniProt C5XMM2
Pfam PF00628 PF13832
Panther DB PTHR13793
NCBI CDD -
KEGG Orthology K11380; NuA3 HAT complex component NTO1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G14740 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os09g04890.1 : histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed
MaizeGDB (Corn) Zm00025a023148
Brachypodium KQK03068
Barley -
Wheat TraesCS3A02G113700 , TraesCS3B02G133100 , TraesCS3D02G116200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G190400 expressed protein -
2 Sobic.008G020500 CDC45B - Putative DNA replication initiation protein, expressed K06628: cell division control protein 45
3 Sobic.006G155900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
4 Sobic.004G198200 expressed protein -
5 Sobic.004G156600 - -
6 Sobic.001G494300 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
7 Sobic.003G390300 expressed protein -
8 Sobic.003G415500 RALFL1 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed -
9 Sobic.004G061600 expressed protein -
10 Sobic.001G062700 GATA zinc finger domain containing protein, expressed -
11 Sobic.007G153300 ZOS8-07 - C2H2 zinc finger protein, expressed -
12 Sobic.001G331100 expressed protein -
13 Sobic.007G076800 B3 DNA binding domain containing protein, expressed -
14 Sobic.009G064600 phototropic-responsive NPH3 family protein, putative, expressed -
15 Sobic.006G108000 formin, putative, expressed -
16 Sobic.005G168500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
17 Sobic.002G282100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
18 Sobic.006G186200 exostosin family domain containing protein, expressed -
19 Sobic.008G163800 expressed protein -
20 Sobic.007G130000 STE_MEKK_ste11_MAP3K.21 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -


Gene co-expression network
sample Sobic003G040100 Sobic003G040100 Sobic009G190400 Sobic009G190400 Sobic003G040100--Sobic009G190400 Sobic008G020500 Sobic008G020500 Sobic003G040100--Sobic008G020500 Sobic006G155900 Sobic006G155900 Sobic003G040100--Sobic006G155900 Sobic004G198200 Sobic004G198200 Sobic003G040100--Sobic004G198200 Sobic004G156600 Sobic004G156600 Sobic003G040100--Sobic004G156600 Sobic001G494300 Sobic001G494300 Sobic003G040100--Sobic001G494300 Sobic003G390300 Sobic003G390300 Sobic003G040100--Sobic003G390300 Sobic003G415500 Sobic003G415500 Sobic003G040100--Sobic003G415500 Sobic004G061600 Sobic004G061600 Sobic003G040100--Sobic004G061600 Sobic009G190400--Sobic003G040100 Sobic009G190400--Sobic006G155900 Sobic009G190400--Sobic004G198200 Sobic009G064600 Sobic009G064600 Sobic009G190400--Sobic009G064600 Sobic009G190400--Sobic003G415500 Sobic009G190400--Sobic008G020500 Sobic002G282100 Sobic002G282100 Sobic009G190400--Sobic002G282100 Sobic009G190400--Sobic004G156600 Sobic001G070200 Sobic001G070200 Sobic009G190400--Sobic001G070200 Sobic008G020500--Sobic004G198200 Sobic008G020500--Sobic003G040100 Sobic008G020500--Sobic006G155900 Sobic008G020500--Sobic001G494300 Sobic008G020500--Sobic009G190400 Sobic007G130000 Sobic007G130000 Sobic008G020500--Sobic007G130000 Sobic008G020500--Sobic001G070200 Sobic001G331100 Sobic001G331100 Sobic008G020500--Sobic001G331100 Sobic008G020500--Sobic004G156600 Sobic006G155900--Sobic009G190400 Sobic006G155900--Sobic004G198200 Sobic006G155900--Sobic003G040100 Sobic006G155900--Sobic001G494300 Sobic006G155900--Sobic008G020500 Sobic003G047200 Sobic003G047200 Sobic006G155900--Sobic003G047200 Sobic003G414400 Sobic003G414400 Sobic006G155900--Sobic003G414400 Sobic006G155900--Sobic001G070200 Sobic006G155900--Sobic001G331100 Sobic004G198200--Sobic008G020500 Sobic004G198200--Sobic006G155900 Sobic004G198200--Sobic009G190400 Sobic004G198200--Sobic003G040100 Sobic004G198200--Sobic001G070200 Sobic004G198200--Sobic007G130000 Sobic004G198200--Sobic001G494300 Sobic004G198200--Sobic003G414400 Sobic001G427400 Sobic001G427400 Sobic004G198200--Sobic001G427400 Sobic004G156600--Sobic003G390300 Sobic002G299800 Sobic002G299800 Sobic004G156600--Sobic002G299800 Sobic006G186200 Sobic006G186200 Sobic004G156600--Sobic006G186200 Sobic004G156600--Sobic004G061600 Sobic004G107400 Sobic004G107400 Sobic004G156600--Sobic004G107400 Sobic008G136900 Sobic008G136900 Sobic004G156600--Sobic008G136900 Sobic001G062700 Sobic001G062700 Sobic004G156600--Sobic001G062700 Sobic004G156600--Sobic003G040100 Sobic007G076800 Sobic007G076800 Sobic004G156600--Sobic007G076800 Sobic001G494300--Sobic006G155900 Sobic001G494300--Sobic008G020500 Sobic001G494300--Sobic004G198200 Sobic001G494300--Sobic003G040100 Sobic007G019600 Sobic007G019600 Sobic001G494300--Sobic007G019600 Sobic001G494300--Sobic001G427400 Sobic001G494300--Sobic003G047200 Sobic009G163700 Sobic009G163700 Sobic001G494300--Sobic009G163700 Sobic001G494300--Sobic007G130000 Sobic003G390300--Sobic004G107400 Sobic003G390300--Sobic004G061600 Sobic003G390300--Sobic008G136900 Sobic003G390300--Sobic001G062700 Sobic003G104900 Sobic003G104900 Sobic003G390300--Sobic003G104900 Sobic010G014900 Sobic010G014900 Sobic003G390300--Sobic010G014900 Sobic007G158400 Sobic007G158400 Sobic003G390300--Sobic007G158400 Sobic001G137200 Sobic001G137200 Sobic003G390300--Sobic001G137200 Sobic009G028600 Sobic009G028600 Sobic003G390300--Sobic009G028600 Sobic007G206700 Sobic007G206700 Sobic003G415500--Sobic007G206700 Sobic003G415500--Sobic003G040100 Sobic003G415500--Sobic009G190400 Sobic003G415500--Sobic003G390300 Sobic003G083700 Sobic003G083700 Sobic003G415500--Sobic003G083700 Sobic003G415500--Sobic001G062700 Sobic003G226100 Sobic003G226100 Sobic003G415500--Sobic003G226100 Sobic003G148500 Sobic003G148500 Sobic003G415500--Sobic003G148500 Sobic003G415500--Sobic007G076800 Sobic004G061600--Sobic003G390300 Sobic004G061600--Sobic007G158400 Sobic004G061600--Sobic008G136900 Sobic004G061600--Sobic010G014900 Sobic004G061600--Sobic001G062700 Sobic004G061600--Sobic004G107400 Sobic005G168500 Sobic005G168500 Sobic004G061600--Sobic005G168500 Sobic004G061600--Sobic001G137200 Sobic006G273500 Sobic006G273500 Sobic004G061600--Sobic006G273500
Octagon: transcription factors


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