Gene annotation
Transcriptome id Sobic.001G062700.1
Synonym Sb01g005690, GATA2
Functional annotation GATA zinc finger domain containing protein, expressed
UniProt C5WY43
Pfam PF00320
Panther DB PTHR10071 PTHR10071:SF172
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G60530 : GATA transcription factor 4
RAP-DB (Rice) LOC_Os10g40810.1 : GATA zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008505 , Zm00025a051974 , Zm00025a003323
Brachypodium KQK24170 , KQK05338 , KQK05337 , KQJ97775
Barley HORVU1Hr1G056280.2 , HORVU1Hr1G056280.1 , HORVU4Hr1G088280.8 , HORVU4Hr1G088280.1 , HORVU4Hr1G088280.2 , HORVU4Hr1G088280.3 , HORVU4Hr1G088280.4
Wheat TraesCS1B02G234800 , TraesCS4D02G362800 , TraesCS1D02G223200 , TraesCS5A02G538600 , TraesCS1A02G221600 , TraesCS4B02G374400
Populus PNT49662


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G390300 expressed protein -
2 Sobic.004G061600 expressed protein -
3 Sobic.008G136900 expressed protein -
4 Sobic.007G092300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.010G119600 embryogenesis transmembrane protein, putative, expressed -
6 Sobic.010G259200 harpin-induced protein 1 domain containing protein, expressed -
7 Sobic.007G206700 lectin-like protein kinase, putative, expressed -
8 Sobic.010G014900 expressed protein -
9 Sobic.004G107400 expressed protein -
10 Sobic.007G158400 DUF617 domain containing protein, expressed -
11 Sobic.001G402701 - -
12 Sobic.005G168500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
13 Sobic.001G137200 homeobox domain containing protein, expressed -
14 Sobic.007G076800 B3 DNA binding domain containing protein, expressed -
15 Sobic.010G014300 expressed protein -
16 Sobic.003G359200 DUF740 domain containing protein, expressed -
17 Sobic.004G156600 - -
18 Sobic.008G163800 expressed protein -
19 Sobic.009G028600 expressed protein -
20 Sobic.003G104900 methyltransferase, putative, expressed K08241: jasmonate O-methyltransferase


Gene co-expression network
sample Sobic001G062700 Sobic001G062700 Sobic003G390300 Sobic003G390300 Sobic001G062700--Sobic003G390300 Sobic004G061600 Sobic004G061600 Sobic001G062700--Sobic004G061600 Sobic008G136900 Sobic008G136900 Sobic001G062700--Sobic008G136900 Sobic007G092300 Sobic007G092300 Sobic001G062700--Sobic007G092300 Sobic010G119600 Sobic010G119600 Sobic001G062700--Sobic010G119600 Sobic010G259200 Sobic010G259200 Sobic001G062700--Sobic010G259200 Sobic007G206700 Sobic007G206700 Sobic001G062700--Sobic007G206700 Sobic010G014900 Sobic010G014900 Sobic001G062700--Sobic010G014900 Sobic004G107400 Sobic004G107400 Sobic001G062700--Sobic004G107400 Sobic003G390300--Sobic004G107400 Sobic003G390300--Sobic004G061600 Sobic003G390300--Sobic008G136900 Sobic003G390300--Sobic001G062700 Sobic003G104900 Sobic003G104900 Sobic003G390300--Sobic003G104900 Sobic003G390300--Sobic010G014900 Sobic007G158400 Sobic007G158400 Sobic003G390300--Sobic007G158400 Sobic001G137200 Sobic001G137200 Sobic003G390300--Sobic001G137200 Sobic009G028600 Sobic009G028600 Sobic003G390300--Sobic009G028600 Sobic004G061600--Sobic003G390300 Sobic004G061600--Sobic007G158400 Sobic004G061600--Sobic008G136900 Sobic004G061600--Sobic010G014900 Sobic004G061600--Sobic001G062700 Sobic004G061600--Sobic004G107400 Sobic005G168500 Sobic005G168500 Sobic004G061600--Sobic005G168500 Sobic004G061600--Sobic001G137200 Sobic006G273500 Sobic006G273500 Sobic004G061600--Sobic006G273500 Sobic008G136900--Sobic003G390300 Sobic008G136900--Sobic004G061600 Sobic008G136900--Sobic004G107400 Sobic001G103400 Sobic001G103400 Sobic008G136900--Sobic001G103400 Sobic008G136900--Sobic007G158400 Sobic001G483700 Sobic001G483700 Sobic008G136900--Sobic001G483700 Sobic008G136900--Sobic010G014900 Sobic008G136900--Sobic003G104900 Sobic008G136900--Sobic009G028600 Sobic007G092300--Sobic001G062700 Sobic007G092300--Sobic010G119600 Sobic007G092300--Sobic010G259200 Sobic007G092300--Sobic003G390300 Sobic007G092300--Sobic004G061600 Sobic007G092300--Sobic008G136900 Sobic010G014300 Sobic010G014300 Sobic007G092300--Sobic010G014300 Sobic007G092300--Sobic007G206700 Sobic007G092300--Sobic005G168500 Sobic010G119600--Sobic010G259200 Sobic010G119600--Sobic001G483700 Sobic010G119600--Sobic003G390300 Sobic010G119600--Sobic001G137200 Sobic010G002850 Sobic010G002850 Sobic010G119600--Sobic010G002850 Sobic010G119600--Sobic007G206700 Sobic010G119600--Sobic003G104900 Sobic010G119600--Sobic001G062700 Sobic003G083700 Sobic003G083700 Sobic010G119600--Sobic003G083700 Sobic010G259200--Sobic007G206700 Sobic002G001300 Sobic002G001300 Sobic010G259200--Sobic002G001300 Sobic010G259200--Sobic010G119600 Sobic010G259200--Sobic003G083700 Sobic001G402701 Sobic001G402701 Sobic010G259200--Sobic001G402701 Sobic010G259200--Sobic003G104900 Sobic010G259200--Sobic003G390300 Sobic010G259200--Sobic010G002850 Sobic010G259200--Sobic010G014300 Sobic007G206700--Sobic010G259200 Sobic007G206700--Sobic002G001300 Sobic007G206700--Sobic003G083700 Sobic007G206700--Sobic010G119600 Sobic007G206700--Sobic001G402701 Sobic007G206700--Sobic003G390300 Sobic007G206700--Sobic003G104900 Sobic010G087200 Sobic010G087200 Sobic007G206700--Sobic010G087200 Sobic007G206700--Sobic001G062700 Sobic010G014900--Sobic007G158400 Sobic010G014900--Sobic004G107400 Sobic010G014900--Sobic001G137200 Sobic006G171000 Sobic006G171000 Sobic010G014900--Sobic006G171000 Sobic010G014900--Sobic009G028600 Sobic005G231800 Sobic005G231800 Sobic010G014900--Sobic005G231800 Sobic002G285525 Sobic002G285525 Sobic010G014900--Sobic002G285525 Sobic004G226300 Sobic004G226300 Sobic010G014900--Sobic004G226300 Sobic001G527400 Sobic001G527400 Sobic010G014900--Sobic001G527400 Sobic004G107400--Sobic006G171000 Sobic004G107400--Sobic010G014900 Sobic004G107400--Sobic001G137200 Sobic004G107400--Sobic003G390300 Sobic005G209800 Sobic005G209800 Sobic004G107400--Sobic005G209800 Sobic002G078850 Sobic002G078850 Sobic004G107400--Sobic002G078850 Sobic004G107400--Sobic003G104900 Sobic004G107400--Sobic005G231800 Sobic008G002100 Sobic008G002100 Sobic004G107400--Sobic008G002100
Octagon: transcription factors


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