Gene annotation
Transcriptome id Sobic.001G402701.1
Synonym -
Functional annotation -
UniProt A0A1Z5S9Y1 , C5WNF5
Pfam PF04535
Panther DB PTHR11615 PTHR11615:SF142
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G38480 : Uncharacterised protein family (UPF0497)
RAP-DB (Rice) LOC_Os03g18680.1 : membrane associated DUF588 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a052623 , Zm00025a002046
Brachypodium PNT77564
Barley HORVU4Hr1G055070.1 , HORVU4Hr1G055070.3 , HORVU4Hr1G055070.2 , HORVU4Hr1G055070.5 , HORVU4Hr1G055070.7 , HORVU4Hr1G055070.6 , HORVU4Hr1G055070.19 , HORVU4Hr1G055070.15 , HORVU4Hr1G055070.14 , HORVU4Hr1G055070.11 , HORVU4Hr1G055070.10 , HORVU4Hr1G055070.13 , HORVU4Hr1G055070.12 , HORVU4Hr1G055070.20 , HORVU4Hr1G055070.21 , HORVU4Hr1G055070.23 , HORVU4Hr1G055070.24 , HORVU4Hr1G055070.25
Wheat TraesCS4D02G190700 , TraesCS4A02G114900 , TraesCS4B02G189300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G148600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
2 Sobic.010G259200 harpin-induced protein 1 domain containing protein, expressed -
3 Sobic.003G083700 DNA binding protein, putative, expressed -
4 Sobic.007G206700 lectin-like protein kinase, putative, expressed -
5 Sobic.003G104900 methyltransferase, putative, expressed K08241: jasmonate O-methyltransferase
6 Sobic.010G002850 - -
7 Sobic.003G390300 expressed protein -
8 Sobic.010G119600 embryogenesis transmembrane protein, putative, expressed -
9 Sobic.003G142900 chloroplast ATP synthase a chain precursor, putative, expressed K02108: ATPF0A, F-type H+-transporting ATPase subunit a
10 Sobic.005G209800 nodulin, putative, expressed -
11 Sobic.002G001300 laccase precursor protein, putative, expressed K05909: laccase
12 Sobic.002G003100 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
13 Sobic.006G171000 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL7 - SBP-box gene family member, expressed -
14 Sobic.001G483700 Cupin domain containing protein, expressed -
15 Sobic.008G002100 zinc finger, C3HC4 type domain containing protein -
16 Sobic.008G023000 expressed protein -
17 Sobic.001G137200 homeobox domain containing protein, expressed -
18 Sobic.005G156700 laccase precursor protein, putative, expressed -
19 Sobic.004G107400 expressed protein -
20 Sobic.001G527400 - -


Gene co-expression network
sample Sobic001G402701 Sobic001G402701 Sobic001G148600 Sobic001G148600 Sobic001G402701--Sobic001G148600 Sobic010G259200 Sobic010G259200 Sobic001G402701--Sobic010G259200 Sobic003G083700 Sobic003G083700 Sobic001G402701--Sobic003G083700 Sobic007G206700 Sobic007G206700 Sobic001G402701--Sobic007G206700 Sobic003G104900 Sobic003G104900 Sobic001G402701--Sobic003G104900 Sobic010G002850 Sobic010G002850 Sobic001G402701--Sobic010G002850 Sobic003G390300 Sobic003G390300 Sobic001G402701--Sobic003G390300 Sobic010G119600 Sobic010G119600 Sobic001G402701--Sobic010G119600 Sobic003G142900 Sobic003G142900 Sobic001G402701--Sobic003G142900 Sobic001G148600--Sobic001G402701 Sobic008G031600 Sobic008G031600 Sobic001G148600--Sobic008G031600 Sobic003G201400 Sobic003G201400 Sobic001G148600--Sobic003G201400 Sobic001G460700 Sobic001G460700 Sobic001G148600--Sobic001G460700 Sobic010G161300 Sobic010G161300 Sobic001G148600--Sobic010G161300 Sobic010G029200 Sobic010G029200 Sobic001G148600--Sobic010G029200 Sobic010G045300 Sobic010G045300 Sobic001G148600--Sobic010G045300 Sobic010G208300 Sobic010G208300 Sobic001G148600--Sobic010G208300 Sobic003G081400 Sobic003G081400 Sobic001G148600--Sobic003G081400 Sobic010G259200--Sobic007G206700 Sobic002G001300 Sobic002G001300 Sobic010G259200--Sobic002G001300 Sobic010G259200--Sobic010G119600 Sobic010G259200--Sobic003G083700 Sobic010G259200--Sobic001G402701 Sobic010G259200--Sobic003G104900 Sobic010G259200--Sobic003G390300 Sobic010G259200--Sobic010G002850 Sobic010G014300 Sobic010G014300 Sobic010G259200--Sobic010G014300 Sobic003G083700--Sobic003G104900 Sobic003G083700--Sobic010G259200 Sobic003G083700--Sobic007G206700 Sobic003G083700--Sobic002G001300 Sobic001G483700 Sobic001G483700 Sobic003G083700--Sobic001G483700 Sobic003G083700--Sobic010G002850 Sobic005G209800 Sobic005G209800 Sobic003G083700--Sobic005G209800 Sobic003G083700--Sobic003G390300 Sobic003G083700--Sobic001G402701 Sobic007G206700--Sobic010G259200 Sobic007G206700--Sobic002G001300 Sobic007G206700--Sobic003G083700 Sobic007G206700--Sobic010G119600 Sobic007G206700--Sobic001G402701 Sobic007G206700--Sobic003G390300 Sobic007G206700--Sobic003G104900 Sobic010G087200 Sobic010G087200 Sobic007G206700--Sobic010G087200 Sobic001G062700 Sobic001G062700 Sobic007G206700--Sobic001G062700 Sobic003G104900--Sobic005G209800 Sobic003G104900--Sobic001G483700 Sobic008G002100 Sobic008G002100 Sobic003G104900--Sobic008G002100 Sobic008G023000 Sobic008G023000 Sobic003G104900--Sobic008G023000 Sobic001G527400 Sobic001G527400 Sobic003G104900--Sobic001G527400 Sobic007G183000 Sobic007G183000 Sobic003G104900--Sobic007G183000 Sobic005G231800 Sobic005G231800 Sobic003G104900--Sobic005G231800 Sobic004G226300 Sobic004G226300 Sobic003G104900--Sobic004G226300 Sobic006G171000 Sobic006G171000 Sobic003G104900--Sobic006G171000 Sobic010G002850--Sobic005G209800 Sobic010G002850--Sobic008G023000 Sobic010G002850--Sobic008G002100 Sobic010G002850--Sobic004G226300 Sobic010G002850--Sobic001G527400 Sobic010G002850--Sobic007G183000 Sobic010G002850--Sobic006G171000 Sobic005G156700 Sobic005G156700 Sobic010G002850--Sobic005G156700 Sobic010G002850--Sobic005G231800 Sobic004G107400 Sobic004G107400 Sobic003G390300--Sobic004G107400 Sobic004G061600 Sobic004G061600 Sobic003G390300--Sobic004G061600 Sobic008G136900 Sobic008G136900 Sobic003G390300--Sobic008G136900 Sobic003G390300--Sobic001G062700 Sobic003G390300--Sobic003G104900 Sobic010G014900 Sobic010G014900 Sobic003G390300--Sobic010G014900 Sobic007G158400 Sobic007G158400 Sobic003G390300--Sobic007G158400 Sobic001G137200 Sobic001G137200 Sobic003G390300--Sobic001G137200 Sobic009G028600 Sobic009G028600 Sobic003G390300--Sobic009G028600 Sobic010G119600--Sobic010G259200 Sobic010G119600--Sobic001G483700 Sobic010G119600--Sobic003G390300 Sobic010G119600--Sobic001G137200 Sobic010G119600--Sobic010G002850 Sobic010G119600--Sobic007G206700 Sobic010G119600--Sobic003G104900 Sobic010G119600--Sobic001G062700 Sobic010G119600--Sobic003G083700 Sobic003G142900--Sobic010G029200 Sobic003G142900--Sobic008G023000 Sobic003G142900--Sobic008G002100 Sobic003G142900--Sobic001G527400 Sobic003G142900--Sobic004G226300 Sobic003G142900--Sobic007G183000 Sobic003G142900--Sobic005G209800 Sobic003G173032 Sobic003G173032 Sobic003G142900--Sobic003G173032 Sobic003G142900--Sobic005G231800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.