Gene annotation
Transcriptome id Sobic.006G171000.1
Synonym Sb06g024630, SPL10, SbSBP11
Functional annotation Highest expression level in primordial inflorescence (PubMedID : 27501690)
OsSPL7 - SBP-box gene family member, expressed
UniProt C5YDH8
Pfam PF03110
Panther DB PTHR31251 PTHR31251:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G20980 : squamosa promoter binding protein-like 14
RAP-DB (Rice) LOC_Os04g46580.1 : OsSPL7 - SBP-box gene family member, expressed
MaizeGDB (Corn) Zm00025a014741 , Zm00025a056870 , Zm00025a034900 , Zm00025a005100 , Zm00025a030402 , Zm00025a030405 , Zm00025a014209
Brachypodium KQJ93579 , KQJ98926 , KQK11264 , PNT61614 , PNT61615 , PNT65995 , KQJ83945 , PNT68391 , PNT68392 , PNT68393
Barley HORVU6Hr1G031450.10 , HORVU2Hr1G097610.1 , HORVU2Hr1G097610.2 , HORVU2Hr1G097580.1 , HORVU5Hr1G073440.10 , HORVU5Hr1G076380.11 , HORVU5Hr1G076380.10 , HORVU3Hr1G050350.5 , HORVU3Hr1G050350.6 , HORVU3Hr1G050350.7 , HORVU3Hr1G050350.1 , HORVU3Hr1G050350.3 , HORVU5Hr1G076380.4 , HORVU5Hr1G076380.9 , HORVU5Hr1G076380.8 , HORVU2Hr1G097580.2 , HORVU6Hr1G031450.3 , HORVU6Hr1G031450.6 , HORVU5Hr1G073440.9 , HORVU5Hr1G073440.8 , HORVU5Hr1G073440.5 , HORVU5Hr1G073440.4 , HORVU5Hr1G073440.7 , HORVU5Hr1G073440.6 , HORVU5Hr1G073440.1 , HORVU5Hr1G073440.3 , HORVU5Hr1G073440.2
Wheat TraesCS7A02G260500 , TraesCS5D02G294400 , TraesCS5D02G294400 , TraesCS2B02G250900 , TraesCS7D02G245200 , TraesCS7D02G245200 , TraesCS5D02G273900 , TraesCS5D02G273900 , TraesCS7B02G158500 , TraesCS6D02G145200 , TraesCS7B02G144900 , TraesCS5A02G286700 , TraesCS5A02G286700 , TraesCS5A02G265900 , TraesCS5A02G265900 , TraesCS2A02G413900 , TraesCS7D02G261500 , TraesCS6A02G155300 , TraesCS7B02G144900 , TraesCS2B02G432700 , TraesCS2D02G410700 , TraesCS5B02G286000 , TraesCS5B02G265600 , TraesCS5B02G265600 , TraesCS7A02G246500 , TraesCS6B02G183400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G023000 expressed protein -
2 Sobic.004G226300 expressed protein -
3 Sobic.008G002100 zinc finger, C3HC4 type domain containing protein -
4 Sobic.007G183000 helix-loop-helix DNA-binding domain containing protein, expressed -
5 Sobic.001G527400 - -
6 Sobic.005G209800 nodulin, putative, expressed -
7 Sobic.005G231800 tropinone reductase, putative, expressed K08081: tropinone reductase I
8 Sobic.003G173032 - -
9 Sobic.002G048250 - -
10 Sobic.004G224300 5-azacytidine resistance protein related, putative, expressed -
11 Sobic.002G285525 - -
12 Sobic.001G137200 homeobox domain containing protein, expressed -
13 Sobic.003G290700 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
14 Sobic.010G002850 - -
15 Sobic.004G089700 - -
16 Sobic.010G152700 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.003G337700 WRKY20, expressed -
18 Sobic.005G156700 laccase precursor protein, putative, expressed -
19 Sobic.009G223700 - -
20 Sobic.001G483700 Cupin domain containing protein, expressed -


Gene co-expression network
sample Sobic006G171000 Sobic006G171000 Sobic008G023000 Sobic008G023000 Sobic006G171000--Sobic008G023000 Sobic004G226300 Sobic004G226300 Sobic006G171000--Sobic004G226300 Sobic008G002100 Sobic008G002100 Sobic006G171000--Sobic008G002100 Sobic007G183000 Sobic007G183000 Sobic006G171000--Sobic007G183000 Sobic001G527400 Sobic001G527400 Sobic006G171000--Sobic001G527400 Sobic005G209800 Sobic005G209800 Sobic006G171000--Sobic005G209800 Sobic005G231800 Sobic005G231800 Sobic006G171000--Sobic005G231800 Sobic003G173032 Sobic003G173032 Sobic006G171000--Sobic003G173032 Sobic002G048250 Sobic002G048250 Sobic006G171000--Sobic002G048250 Sobic008G023000--Sobic008G002100 Sobic008G023000--Sobic001G527400 Sobic008G023000--Sobic007G183000 Sobic008G023000--Sobic005G209800 Sobic008G023000--Sobic004G226300 Sobic008G023000--Sobic003G173032 Sobic008G023000--Sobic005G231800 Sobic008G023000--Sobic002G048250 Sobic008G023000--Sobic006G171000 Sobic004G226300--Sobic007G183000 Sobic004G226300--Sobic001G527400 Sobic004G226300--Sobic008G023000 Sobic004G226300--Sobic008G002100 Sobic004G226300--Sobic002G048250 Sobic004G226300--Sobic005G231800 Sobic004G226300--Sobic005G209800 Sobic004G226300--Sobic006G171000 Sobic004G226300--Sobic003G173032 Sobic008G002100--Sobic008G023000 Sobic008G002100--Sobic001G527400 Sobic008G002100--Sobic005G209800 Sobic008G002100--Sobic007G183000 Sobic008G002100--Sobic004G226300 Sobic008G002100--Sobic005G231800 Sobic008G002100--Sobic003G173032 Sobic008G002100--Sobic002G048250 Sobic008G002100--Sobic006G171000 Sobic007G183000--Sobic004G226300 Sobic007G183000--Sobic001G527400 Sobic007G183000--Sobic002G048250 Sobic007G183000--Sobic008G023000 Sobic007G183000--Sobic008G002100 Sobic007G183000--Sobic005G231800 Sobic007G183000--Sobic005G209800 Sobic007G183000--Sobic003G173032 Sobic007G183000--Sobic006G171000 Sobic001G527400--Sobic008G023000 Sobic001G527400--Sobic008G002100 Sobic001G527400--Sobic007G183000 Sobic001G527400--Sobic004G226300 Sobic001G527400--Sobic002G048250 Sobic001G527400--Sobic005G209800 Sobic001G527400--Sobic005G231800 Sobic001G527400--Sobic003G173032 Sobic001G527400--Sobic006G171000 Sobic005G209800--Sobic008G002100 Sobic005G209800--Sobic008G023000 Sobic005G209800--Sobic001G527400 Sobic005G209800--Sobic007G183000 Sobic005G209800--Sobic004G226300 Sobic005G209800--Sobic005G231800 Sobic005G209800--Sobic006G171000 Sobic005G209800--Sobic003G173032 Sobic005G209800--Sobic002G048250 Sobic005G231800--Sobic008G023000 Sobic005G231800--Sobic001G527400 Sobic005G231800--Sobic008G002100 Sobic005G231800--Sobic007G183000 Sobic005G231800--Sobic004G226300 Sobic005G231800--Sobic005G209800 Sobic005G231800--Sobic002G048250 Sobic005G231800--Sobic003G173032 Sobic005G231800--Sobic006G171000 Sobic003G173032--Sobic008G023000 Sobic003G173032--Sobic008G002100 Sobic003G173032--Sobic001G527400 Sobic003G173032--Sobic007G183000 Sobic003G173032--Sobic004G226300 Sobic003G173032--Sobic005G209800 Sobic003G173032--Sobic005G231800 Sobic003G173032--Sobic002G048250 Sobic003G173032--Sobic006G171000 Sobic002G048250--Sobic007G183000 Sobic002G048250--Sobic001G527400 Sobic002G048250--Sobic004G226300 Sobic002G048250--Sobic008G023000 Sobic002G048250--Sobic008G002100 Sobic002G048250--Sobic005G231800 Sobic002G048250--Sobic005G209800 Sobic002G048250--Sobic003G173032 Sobic004G224300 Sobic004G224300 Sobic002G048250--Sobic004G224300
Octagon: transcription factors


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