Gene annotation
Transcriptome id Sobic.010G152700.1
Synonym Sb10g020490, SPCH
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt C5Z3L8
Pfam PF00010
Panther DB PTHR11514:SF58 PTHR11514
NCBI CDD KOG4304; Transcriptional repressors of the hairy/E(spl) family (contains HLH)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G53210 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os06g33450.2 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034418 , Zm00025a019928 , Zm00025a050887
Brachypodium PNT66286 , KQK18079
Barley HORVU7Hr1G079250.1
Wheat TraesCS7B02G232000 , TraesCS7A02G350900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G137200 homeobox domain containing protein, expressed -
2 Sobic.006G171000 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL7 - SBP-box gene family member, expressed -
3 Sobic.008G002100 zinc finger, C3HC4 type domain containing protein -
4 Sobic.001G527400 - -
5 Sobic.005G209800 nodulin, putative, expressed -
6 Sobic.007G183000 helix-loop-helix DNA-binding domain containing protein, expressed -
7 Sobic.008G023000 expressed protein -
8 Sobic.004G226300 expressed protein -
9 Sobic.002G285525 - -
10 Sobic.005G231800 tropinone reductase, putative, expressed K08081: tropinone reductase I
11 Sobic.003G173032 - -
12 Sobic.002G048250 - -
13 Sobic.003G191800 helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.005G102200 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed -
15 Sobic.001G483700 Cupin domain containing protein, expressed -
16 Sobic.004G224300 5-azacytidine resistance protein related, putative, expressed -
17 Sobic.002G003100 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
18 Sobic.007G072400 phosphoribosyl transferase, putative, expressed -
19 Sobic.003G290700 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
20 Sobic.004G107400 expressed protein -


Gene co-expression network
sample Sobic010G152700 Sobic010G152700 Sobic001G137200 Sobic001G137200 Sobic010G152700--Sobic001G137200 Sobic006G171000 Sobic006G171000 Sobic010G152700--Sobic006G171000 Sobic008G002100 Sobic008G002100 Sobic010G152700--Sobic008G002100 Sobic001G527400 Sobic001G527400 Sobic010G152700--Sobic001G527400 Sobic005G209800 Sobic005G209800 Sobic010G152700--Sobic005G209800 Sobic007G183000 Sobic007G183000 Sobic010G152700--Sobic007G183000 Sobic008G023000 Sobic008G023000 Sobic010G152700--Sobic008G023000 Sobic004G226300 Sobic004G226300 Sobic010G152700--Sobic004G226300 Sobic002G285525 Sobic002G285525 Sobic010G152700--Sobic002G285525 Sobic001G137200--Sobic002G285525 Sobic001G137200--Sobic010G152700 Sobic001G137200--Sobic006G171000 Sobic001G137200--Sobic005G209800 Sobic001G137200--Sobic004G226300 Sobic001G137200--Sobic008G002100 Sobic001G137200--Sobic007G183000 Sobic001G483700 Sobic001G483700 Sobic001G137200--Sobic001G483700 Sobic001G137200--Sobic001G527400 Sobic006G171000--Sobic008G023000 Sobic006G171000--Sobic004G226300 Sobic006G171000--Sobic008G002100 Sobic006G171000--Sobic007G183000 Sobic006G171000--Sobic001G527400 Sobic006G171000--Sobic005G209800 Sobic005G231800 Sobic005G231800 Sobic006G171000--Sobic005G231800 Sobic003G173032 Sobic003G173032 Sobic006G171000--Sobic003G173032 Sobic002G048250 Sobic002G048250 Sobic006G171000--Sobic002G048250 Sobic008G002100--Sobic008G023000 Sobic008G002100--Sobic001G527400 Sobic008G002100--Sobic005G209800 Sobic008G002100--Sobic007G183000 Sobic008G002100--Sobic004G226300 Sobic008G002100--Sobic005G231800 Sobic008G002100--Sobic003G173032 Sobic008G002100--Sobic002G048250 Sobic008G002100--Sobic006G171000 Sobic001G527400--Sobic008G023000 Sobic001G527400--Sobic008G002100 Sobic001G527400--Sobic007G183000 Sobic001G527400--Sobic004G226300 Sobic001G527400--Sobic002G048250 Sobic001G527400--Sobic005G209800 Sobic001G527400--Sobic005G231800 Sobic001G527400--Sobic003G173032 Sobic001G527400--Sobic006G171000 Sobic005G209800--Sobic008G002100 Sobic005G209800--Sobic008G023000 Sobic005G209800--Sobic001G527400 Sobic005G209800--Sobic007G183000 Sobic005G209800--Sobic004G226300 Sobic005G209800--Sobic005G231800 Sobic005G209800--Sobic006G171000 Sobic005G209800--Sobic003G173032 Sobic005G209800--Sobic002G048250 Sobic007G183000--Sobic004G226300 Sobic007G183000--Sobic001G527400 Sobic007G183000--Sobic002G048250 Sobic007G183000--Sobic008G023000 Sobic007G183000--Sobic008G002100 Sobic007G183000--Sobic005G231800 Sobic007G183000--Sobic005G209800 Sobic007G183000--Sobic003G173032 Sobic007G183000--Sobic006G171000 Sobic008G023000--Sobic008G002100 Sobic008G023000--Sobic001G527400 Sobic008G023000--Sobic007G183000 Sobic008G023000--Sobic005G209800 Sobic008G023000--Sobic004G226300 Sobic008G023000--Sobic003G173032 Sobic008G023000--Sobic005G231800 Sobic008G023000--Sobic002G048250 Sobic008G023000--Sobic006G171000 Sobic004G226300--Sobic007G183000 Sobic004G226300--Sobic001G527400 Sobic004G226300--Sobic008G023000 Sobic004G226300--Sobic008G002100 Sobic004G226300--Sobic002G048250 Sobic004G226300--Sobic005G231800 Sobic004G226300--Sobic005G209800 Sobic004G226300--Sobic006G171000 Sobic004G226300--Sobic003G173032 Sobic002G285525--Sobic007G183000 Sobic002G285525--Sobic001G527400 Sobic002G285525--Sobic004G226300 Sobic003G290700 Sobic003G290700 Sobic002G285525--Sobic003G290700 Sobic002G285525--Sobic008G023000 Sobic002G285525--Sobic008G002100 Sobic002G285525--Sobic002G048250 Sobic002G285525--Sobic005G209800 Sobic004G224300 Sobic004G224300 Sobic002G285525--Sobic004G224300
Octagon: transcription factors


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