Gene annotation
Transcriptome id Sobic.005G102200.1
Synonym Sb05g008860
Functional annotation 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed
UniProt A0A1B6PRE0
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF175
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G06620 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os08g30210.1 : 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed
MaizeGDB (Corn) Zm00025a049599 , Zm00025a054825
Brachypodium KQK23270 , KQJ95259 , KQJ82248
Barley HORVU3Hr1G093370.1 , HORVU4Hr1G089410.1 , HORVU5Hr1G125410.2 , HORVU5Hr1G125410.1 , HORVU1Hr1G018600.5 , HORVU1Hr1G018600.1 , HORVU1Hr1G018600.2 , HORVU4Hr1G000490.1 , HORVU7Hr1G118760.2 , HORVU7Hr1G118760.1 , HORVU7Hr1G061380.1
Wheat TraesCSU02G024200 , TraesCSU02G024200 , TraesCS2B02G066000 , TraesCS2B02G066000 , TraesCS2B02G066000 , TraesCS2D02G490800 , TraesCS6D02G213100 , TraesCS4A02G033200 , TraesCS2B02G076400 , TraesCS6D02G146800 , TraesCS3B02G495600 , TraesCS6A02G221900 , TraesCS5A02G557100 , TraesCS4B02G272100 , TraesCS6B02G259200 , TraesCSU02G030400 , TraesCS2A02G051700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G191800 helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.010G152700 helix-loop-helix DNA-binding domain containing protein, expressed -
3 Sobic.001G137200 homeobox domain containing protein, expressed -
4 Sobic.001G483700 Cupin domain containing protein, expressed -
5 Sobic.002G101800 OsFBX281 - F-box domain containing protein, expressed -
6 Sobic.002G285525 - -
7 Sobic.001G527400 - -
8 Sobic.005G209800 nodulin, putative, expressed -
9 Sobic.008G002100 zinc finger, C3HC4 type domain containing protein -
10 Sobic.006G171000 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL7 - SBP-box gene family member, expressed -
11 Sobic.007G183000 helix-loop-helix DNA-binding domain containing protein, expressed -
12 Sobic.004G226300 expressed protein -
13 Sobic.008G023000 expressed protein -
14 Sobic.004G224300 5-azacytidine resistance protein related, putative, expressed -
15 Sobic.002G048250 - -
16 Sobic.005G231800 tropinone reductase, putative, expressed K08081: tropinone reductase I
17 Sobic.006G169300 - -
18 Sobic.007G139000 ZF-HD protein dimerisation region containing protein, expressed -
19 Sobic.007G072400 phosphoribosyl transferase, putative, expressed -
20 Sobic.003G173032 - -


Gene co-expression network
sample Sobic005G102200 Sobic005G102200 Sobic003G191800 Sobic003G191800 Sobic005G102200--Sobic003G191800 Sobic010G152700 Sobic010G152700 Sobic005G102200--Sobic010G152700 Sobic001G137200 Sobic001G137200 Sobic005G102200--Sobic001G137200 Sobic001G483700 Sobic001G483700 Sobic005G102200--Sobic001G483700 Sobic002G101800 Sobic002G101800 Sobic005G102200--Sobic002G101800 Sobic002G285525 Sobic002G285525 Sobic005G102200--Sobic002G285525 Sobic001G527400 Sobic001G527400 Sobic005G102200--Sobic001G527400 Sobic005G209800 Sobic005G209800 Sobic005G102200--Sobic005G209800 Sobic008G002100 Sobic008G002100 Sobic005G102200--Sobic008G002100 Sobic003G191800--Sobic005G102200 Sobic003G191800--Sobic010G152700 Sobic003G191800--Sobic001G137200 Sobic007G139000 Sobic007G139000 Sobic003G191800--Sobic007G139000 Sobic003G191800--Sobic001G483700 Sobic003G191800--Sobic005G209800 Sobic007G072400 Sobic007G072400 Sobic003G191800--Sobic007G072400 Sobic006G171000 Sobic006G171000 Sobic003G191800--Sobic006G171000 Sobic003G191800--Sobic008G002100 Sobic010G152700--Sobic001G137200 Sobic010G152700--Sobic006G171000 Sobic010G152700--Sobic008G002100 Sobic010G152700--Sobic001G527400 Sobic010G152700--Sobic005G209800 Sobic007G183000 Sobic007G183000 Sobic010G152700--Sobic007G183000 Sobic008G023000 Sobic008G023000 Sobic010G152700--Sobic008G023000 Sobic004G226300 Sobic004G226300 Sobic010G152700--Sobic004G226300 Sobic010G152700--Sobic002G285525 Sobic001G137200--Sobic002G285525 Sobic001G137200--Sobic010G152700 Sobic001G137200--Sobic006G171000 Sobic001G137200--Sobic005G209800 Sobic001G137200--Sobic004G226300 Sobic001G137200--Sobic008G002100 Sobic001G137200--Sobic007G183000 Sobic001G137200--Sobic001G483700 Sobic001G137200--Sobic001G527400 Sobic001G483700--Sobic004G226300 Sobic001G483700--Sobic007G183000 Sobic001G483700--Sobic005G209800 Sobic001G483700--Sobic001G137200 Sobic001G483700--Sobic002G285525 Sobic001G483700--Sobic001G527400 Sobic001G483700--Sobic008G002100 Sobic003G104900 Sobic003G104900 Sobic001G483700--Sobic003G104900 Sobic001G483700--Sobic008G023000 Sobic002G101800--Sobic005G102200 Sobic002G101800--Sobic003G191800 Sobic006G123700 Sobic006G123700 Sobic002G101800--Sobic006G123700 Sobic002G101800--Sobic010G152700 Sobic002G101800--Sobic007G139000 Sobic002G101800--Sobic001G137200 Sobic002G101800--Sobic001G483700 Sobic002G101800--Sobic002G285525 Sobic003G111600 Sobic003G111600 Sobic002G101800--Sobic003G111600 Sobic002G285525--Sobic007G183000 Sobic002G285525--Sobic001G527400 Sobic002G285525--Sobic004G226300 Sobic003G290700 Sobic003G290700 Sobic002G285525--Sobic003G290700 Sobic002G285525--Sobic008G023000 Sobic002G285525--Sobic008G002100 Sobic002G048250 Sobic002G048250 Sobic002G285525--Sobic002G048250 Sobic002G285525--Sobic005G209800 Sobic004G224300 Sobic004G224300 Sobic002G285525--Sobic004G224300 Sobic001G527400--Sobic008G023000 Sobic001G527400--Sobic008G002100 Sobic001G527400--Sobic007G183000 Sobic001G527400--Sobic004G226300 Sobic001G527400--Sobic002G048250 Sobic001G527400--Sobic005G209800 Sobic005G231800 Sobic005G231800 Sobic001G527400--Sobic005G231800 Sobic003G173032 Sobic003G173032 Sobic001G527400--Sobic003G173032 Sobic001G527400--Sobic006G171000 Sobic005G209800--Sobic008G002100 Sobic005G209800--Sobic008G023000 Sobic005G209800--Sobic001G527400 Sobic005G209800--Sobic007G183000 Sobic005G209800--Sobic004G226300 Sobic005G209800--Sobic005G231800 Sobic005G209800--Sobic006G171000 Sobic005G209800--Sobic003G173032 Sobic005G209800--Sobic002G048250 Sobic008G002100--Sobic008G023000 Sobic008G002100--Sobic001G527400 Sobic008G002100--Sobic005G209800 Sobic008G002100--Sobic007G183000 Sobic008G002100--Sobic004G226300 Sobic008G002100--Sobic005G231800 Sobic008G002100--Sobic003G173032 Sobic008G002100--Sobic002G048250 Sobic008G002100--Sobic006G171000
Octagon: transcription factors


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