Gene annotation
Transcriptome id Sobic.009G163700.1
Synonym SOS5, Sb09g022560
Functional annotation fasciclin-like arabinogalactan protein, putative, expressed
UniProt C5YZ75
Pfam PF02469
Panther DB PTHR32382 PTHR32382:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G46550 : Fasciclin-like arabinogalactan family protein
RAP-DB (Rice) LOC_Os05g38500.1 : fasciclin-like arabinogalactan protein, putative, expressed
MaizeGDB (Corn) Zm00025a037694 , Zm00025a043900
Brachypodium KQK10516 , PNT71109 , PNT73164
Barley HORVU3Hr1G086360.3 , HORVU1Hr1G072290.2 , HORVU1Hr1G072290.1 , HORVU3Hr1G086360.2 , HORVU3Hr1G086360.4 , HORVU1Hr1G072290.3
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.009G163700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G494300 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
2 Sobic.002G394200 expressed protein K15711: SMARCA3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3
3 Sobic.002G035500 CIN-like (ClassII) Subclade 13 TCP(PubMedID : 21444336)@basic helix-loop-helix (bHLH) transcription factor(PubMedID : 23915383)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
4 Sobic.006G155900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
5 Sobic.003G040100 PHD-finger domain containing protein, putative, expressed K11380: NuA3 HAT complex component NTO1
6 Sobic.009G257900 expressed protein -
7 Sobic.007G153300 ZOS8-07 - C2H2 zinc finger protein, expressed -
8 Sobic.007G162000 carboxyl-terminal peptidase, putative, expressed -
9 Sobic.007G019600 expressed protein -
10 Sobic.010G209800 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
11 Sobic.004G059100 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor, putative, expressed -
12 Sobic.006G108000 formin, putative, expressed -
13 Sobic.008G020500 CDC45B - Putative DNA replication initiation protein, expressed K06628: cell division control protein 45
14 Sobic.006G163650 - -
15 Sobic.003G406500 antifreeze glycoprotein, putative, expressed -
16 Sobic.009G025400 myosin heavy chain-related, putative, expressed -
17 Sobic.001G414200 expressed protein -
18 Sobic.009G195600 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
19 Sobic.001G331100 expressed protein -
20 Sobic.002G202500 spotted leaf 11, putative, expressed -


Gene co-expression network
sample Sobic009G163700 Sobic009G163700 Sobic001G494300 Sobic001G494300 Sobic009G163700--Sobic001G494300 Sobic002G394200 Sobic002G394200 Sobic009G163700--Sobic002G394200 Sobic002G035500 Sobic002G035500 Sobic009G163700--Sobic002G035500 Sobic006G155900 Sobic006G155900 Sobic009G163700--Sobic006G155900 Sobic003G040100 Sobic003G040100 Sobic009G163700--Sobic003G040100 Sobic009G257900 Sobic009G257900 Sobic009G163700--Sobic009G257900 Sobic007G153300 Sobic007G153300 Sobic009G163700--Sobic007G153300 Sobic007G162000 Sobic007G162000 Sobic009G163700--Sobic007G162000 Sobic007G019600 Sobic007G019600 Sobic009G163700--Sobic007G019600 Sobic001G494300--Sobic006G155900 Sobic008G020500 Sobic008G020500 Sobic001G494300--Sobic008G020500 Sobic004G198200 Sobic004G198200 Sobic001G494300--Sobic004G198200 Sobic001G494300--Sobic003G040100 Sobic001G494300--Sobic007G019600 Sobic001G427400 Sobic001G427400 Sobic001G494300--Sobic001G427400 Sobic003G047200 Sobic003G047200 Sobic001G494300--Sobic003G047200 Sobic001G494300--Sobic009G163700 Sobic007G130000 Sobic007G130000 Sobic001G494300--Sobic007G130000 Sobic009G025400 Sobic009G025400 Sobic002G394200--Sobic009G025400 Sobic004G108400 Sobic004G108400 Sobic002G394200--Sobic004G108400 Sobic002G420000 Sobic002G420000 Sobic002G394200--Sobic002G420000 Sobic007G008300 Sobic007G008300 Sobic002G394200--Sobic007G008300 Sobic002G394200--Sobic009G257900 Sobic001G295400 Sobic001G295400 Sobic002G394200--Sobic001G295400 Sobic002G394200--Sobic001G494300 Sobic006G112800 Sobic006G112800 Sobic002G394200--Sobic006G112800 Sobic005G056800 Sobic005G056800 Sobic002G394200--Sobic005G056800 Sobic002G035500--Sobic007G019600 Sobic005G129600 Sobic005G129600 Sobic002G035500--Sobic005G129600 Sobic004G113900 Sobic004G113900 Sobic002G035500--Sobic004G113900 Sobic010G209800 Sobic010G209800 Sobic002G035500--Sobic010G209800 Sobic004G191600 Sobic004G191600 Sobic002G035500--Sobic004G191600 Sobic003G282600 Sobic003G282600 Sobic002G035500--Sobic003G282600 Sobic002G035500--Sobic009G257900 Sobic004G237300 Sobic004G237300 Sobic002G035500--Sobic004G237300 Sobic002G035500--Sobic007G162000 Sobic009G190400 Sobic009G190400 Sobic006G155900--Sobic009G190400 Sobic006G155900--Sobic004G198200 Sobic006G155900--Sobic003G040100 Sobic006G155900--Sobic001G494300 Sobic006G155900--Sobic008G020500 Sobic006G155900--Sobic003G047200 Sobic003G414400 Sobic003G414400 Sobic006G155900--Sobic003G414400 Sobic001G070200 Sobic001G070200 Sobic006G155900--Sobic001G070200 Sobic001G331100 Sobic001G331100 Sobic006G155900--Sobic001G331100 Sobic003G040100--Sobic009G190400 Sobic003G040100--Sobic008G020500 Sobic003G040100--Sobic006G155900 Sobic003G040100--Sobic004G198200 Sobic004G156600 Sobic004G156600 Sobic003G040100--Sobic004G156600 Sobic003G040100--Sobic001G494300 Sobic003G390300 Sobic003G390300 Sobic003G040100--Sobic003G390300 Sobic003G415500 Sobic003G415500 Sobic003G040100--Sobic003G415500 Sobic004G061600 Sobic004G061600 Sobic003G040100--Sobic004G061600 Sobic004G317200 Sobic004G317200 Sobic009G257900--Sobic004G317200 Sobic009G257900--Sobic004G108400 Sobic009G257900--Sobic009G025400 Sobic009G257900--Sobic005G129600 Sobic004G313900 Sobic004G313900 Sobic009G257900--Sobic004G313900 Sobic004G329000 Sobic004G329000 Sobic009G257900--Sobic004G329000 Sobic001G390400 Sobic001G390400 Sobic009G257900--Sobic001G390400 Sobic004G357000 Sobic004G357000 Sobic009G257900--Sobic004G357000 Sobic009G257900--Sobic004G113900 Sobic003G359200 Sobic003G359200 Sobic007G153300--Sobic003G359200 Sobic003G406500 Sobic003G406500 Sobic007G153300--Sobic003G406500 Sobic003G006500 Sobic003G006500 Sobic007G153300--Sobic003G006500 Sobic007G153300--Sobic004G061600 Sobic007G153300--Sobic004G156600 Sobic007G153300--Sobic003G390300 Sobic008G163800 Sobic008G163800 Sobic007G153300--Sobic008G163800 Sobic001G062700 Sobic001G062700 Sobic007G153300--Sobic001G062700 Sobic008G136900 Sobic008G136900 Sobic007G153300--Sobic008G136900 Sobic002G202500 Sobic002G202500 Sobic007G162000--Sobic002G202500 Sobic009G195600 Sobic009G195600 Sobic007G162000--Sobic009G195600 Sobic007G162000--Sobic007G019600 Sobic007G162000--Sobic003G047200 Sobic007G162000--Sobic001G331100 Sobic007G162000--Sobic002G035500 Sobic001G253900 Sobic001G253900 Sobic007G162000--Sobic001G253900 Sobic007G162000--Sobic006G155900 Sobic003G432000 Sobic003G432000 Sobic007G162000--Sobic003G432000 Sobic007G019600--Sobic002G035500 Sobic007G019600--Sobic004G237300 Sobic007G019600--Sobic001G494300 Sobic007G019600--Sobic003G282600 Sobic007G019600--Sobic006G155900 Sobic007G019600--Sobic007G162000 Sobic010G202100 Sobic010G202100 Sobic007G019600--Sobic010G202100 Sobic007G019600--Sobic005G129600 Sobic007G019600--Sobic009G025400
Octagon: transcription factors


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