Gene annotation
Transcriptome id Sobic.004G059100.1
Synonym SbTri15;SbTri15, Sb04g004960
Functional annotation Trihelix Family (PubMedID : 24864043)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
transcription factor, putative, expressed
UniProt A0A194YMX7
Pfam -
Panther DB PTHR33492 PTHR33492:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G31270 : sequence-specific DNA binding transcription factors
RAP-DB (Rice) LOC_Os02g07800.1 : transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a019125
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G163700 fasciclin-like arabinogalactan protein, putative, expressed -
2 Sobic.010G042200 Rf1, mitochondrial precursor, putative, expressed -
3 Sobic.001G247000 MBTB51 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
4 Sobic.005G131900 inducer of CBF expression 1, putative, expressed -
5 Sobic.006G278800 expressed protein -
6 Sobic.002G035500 CIN-like (ClassII) Subclade 13 TCP(PubMedID : 21444336)@basic helix-loop-helix (bHLH) transcription factor(PubMedID : 23915383)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
7 Sobic.006G108000 formin, putative, expressed -
8 Sobic.002G394200 expressed protein K15711: SMARCA3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3
9 Sobic.005G017100 pentatricopeptide, putative, expressed -
10 Sobic.009G257900 expressed protein -
11 Sobic.007G211400 polygalacturonase inhibitor 2 precursor, putative, expressed -
12 Sobic.006G245200 OsFBX239 - F-box domain containing protein, expressed -
13 Sobic.010G209800 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
14 Sobic.005G021200 expressed protein -
15 Sobic.006G147900 expressed protein -
16 Sobic.007G162000 carboxyl-terminal peptidase, putative, expressed -
17 Sobic.003G189800 expressed protein K14291: phosphorylated adapter RNA export protein
18 Sobic.002G340350 - -
19 Sobic.001G331100 expressed protein -
20 Sobic.004G313900 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein


Gene co-expression network
sample Sobic004G059100 Sobic004G059100 Sobic009G163700 Sobic009G163700 Sobic004G059100--Sobic009G163700 Sobic010G042200 Sobic010G042200 Sobic004G059100--Sobic010G042200 Sobic001G247000 Sobic001G247000 Sobic004G059100--Sobic001G247000 Sobic005G131900 Sobic005G131900 Sobic004G059100--Sobic005G131900 Sobic006G278800 Sobic006G278800 Sobic004G059100--Sobic006G278800 Sobic002G035500 Sobic002G035500 Sobic004G059100--Sobic002G035500 Sobic006G108000 Sobic006G108000 Sobic004G059100--Sobic006G108000 Sobic002G394200 Sobic002G394200 Sobic004G059100--Sobic002G394200 Sobic005G017100 Sobic005G017100 Sobic004G059100--Sobic005G017100 Sobic001G494300 Sobic001G494300 Sobic009G163700--Sobic001G494300 Sobic009G163700--Sobic002G394200 Sobic009G163700--Sobic002G035500 Sobic006G155900 Sobic006G155900 Sobic009G163700--Sobic006G155900 Sobic003G040100 Sobic003G040100 Sobic009G163700--Sobic003G040100 Sobic009G257900 Sobic009G257900 Sobic009G163700--Sobic009G257900 Sobic007G153300 Sobic007G153300 Sobic009G163700--Sobic007G153300 Sobic007G162000 Sobic007G162000 Sobic009G163700--Sobic007G162000 Sobic007G019600 Sobic007G019600 Sobic009G163700--Sobic007G019600 Sobic010G042200--Sobic004G059100 Sobic010G042200--Sobic005G017100 Sobic010G089300 Sobic010G089300 Sobic010G042200--Sobic010G089300 Sobic001G267500 Sobic001G267500 Sobic010G042200--Sobic001G267500 Sobic002G106100 Sobic002G106100 Sobic010G042200--Sobic002G106100 Sobic004G076850 Sobic004G076850 Sobic010G042200--Sobic004G076850 Sobic005G003900 Sobic005G003900 Sobic010G042200--Sobic005G003900 Sobic001G448100 Sobic001G448100 Sobic010G042200--Sobic001G448100 Sobic002G050500 Sobic002G050500 Sobic010G042200--Sobic002G050500 Sobic002G340350 Sobic002G340350 Sobic001G247000--Sobic002G340350 Sobic006G163650 Sobic006G163650 Sobic001G247000--Sobic006G163650 Sobic001G247000--Sobic006G108000 Sobic007G211400 Sobic007G211400 Sobic001G247000--Sobic007G211400 Sobic001G247000--Sobic004G059100 Sobic001G247000--Sobic009G163700 Sobic003G282600 Sobic003G282600 Sobic001G247000--Sobic003G282600 Sobic003G377200 Sobic003G377200 Sobic001G247000--Sobic003G377200 Sobic001G247000--Sobic003G040100 Sobic005G131900--Sobic002G340350 Sobic005G131900--Sobic002G035500 Sobic004G113900 Sobic004G113900 Sobic005G131900--Sobic004G113900 Sobic003G325400 Sobic003G325400 Sobic005G131900--Sobic003G325400 Sobic009G203200 Sobic009G203200 Sobic005G131900--Sobic009G203200 Sobic005G131900--Sobic004G059100 Sobic001G470200 Sobic001G470200 Sobic005G131900--Sobic001G470200 Sobic004G329000 Sobic004G329000 Sobic005G131900--Sobic004G329000 Sobic005G131900--Sobic007G019600 Sobic002G229800 Sobic002G229800 Sobic006G278800--Sobic002G229800 Sobic004G155900 Sobic004G155900 Sobic006G278800--Sobic004G155900 Sobic006G278800--Sobic004G059100 Sobic002G306300 Sobic002G306300 Sobic006G278800--Sobic002G306300 Sobic001G474300 Sobic001G474300 Sobic006G278800--Sobic001G474300 Sobic008G145300 Sobic008G145300 Sobic006G278800--Sobic008G145300 Sobic006G278800--Sobic006G108000 Sobic002G348700 Sobic002G348700 Sobic006G278800--Sobic002G348700 Sobic009G254400 Sobic009G254400 Sobic006G278800--Sobic009G254400 Sobic002G035500--Sobic007G019600 Sobic005G129600 Sobic005G129600 Sobic002G035500--Sobic005G129600 Sobic002G035500--Sobic004G113900 Sobic010G209800 Sobic010G209800 Sobic002G035500--Sobic010G209800 Sobic004G191600 Sobic004G191600 Sobic002G035500--Sobic004G191600 Sobic002G035500--Sobic003G282600 Sobic002G035500--Sobic009G257900 Sobic004G237300 Sobic004G237300 Sobic002G035500--Sobic004G237300 Sobic002G035500--Sobic007G162000 Sobic003G406500 Sobic003G406500 Sobic006G108000--Sobic003G406500 Sobic001G331100 Sobic001G331100 Sobic006G108000--Sobic001G331100 Sobic004G115600 Sobic004G115600 Sobic006G108000--Sobic004G115600 Sobic008G163800 Sobic008G163800 Sobic006G108000--Sobic008G163800 Sobic006G245200 Sobic006G245200 Sobic006G108000--Sobic006G245200 Sobic002G221400 Sobic002G221400 Sobic006G108000--Sobic002G221400 Sobic006G108000--Sobic009G254400 Sobic006G108000--Sobic003G040100 Sobic006G108000--Sobic007G153300 Sobic009G025400 Sobic009G025400 Sobic002G394200--Sobic009G025400 Sobic004G108400 Sobic004G108400 Sobic002G394200--Sobic004G108400 Sobic002G420000 Sobic002G420000 Sobic002G394200--Sobic002G420000 Sobic007G008300 Sobic007G008300 Sobic002G394200--Sobic007G008300 Sobic002G394200--Sobic009G257900 Sobic001G295400 Sobic001G295400 Sobic002G394200--Sobic001G295400 Sobic002G394200--Sobic001G494300 Sobic006G112800 Sobic006G112800 Sobic002G394200--Sobic006G112800 Sobic005G056800 Sobic005G056800 Sobic002G394200--Sobic005G056800 Sobic005G017100--Sobic001G267500 Sobic005G017100--Sobic003G377200 Sobic005G017100--Sobic006G163650 Sobic005G017100--Sobic001G247000 Sobic005G017100--Sobic010G042200 Sobic005G017100--Sobic004G059100 Sobic003G100200 Sobic003G100200 Sobic005G017100--Sobic003G100200 Sobic005G017100--Sobic002G340350 Sobic001G312700 Sobic001G312700 Sobic005G017100--Sobic001G312700
Octagon: transcription factors


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