Gene annotation
| Transcriptome id | Sobic.001G247000.1 |
|---|---|
| Synonym | BPM1, Sb01g021860, ATBPM1 |
| Functional annotation | MBTB51 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed |
| UniProt | C5X1K2 |
| Pfam | PF00651 |
| Panther DB | PTHR26379 PTHR26379:SF159 |
| NCBI CDD | - |
| KEGG Orthology | K10523; speckle-type POZ protein |
| Gene Ontology | GO:0005515; protein binding |
Orthologs (automatic annotation)
| TAIR | AT5G19000 : BTB-POZ and MATH domain 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os10g29310.1 : MBTB51 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed |
| MaizeGDB (Corn) | Zm00025a009229 |
| Brachypodium | - |
| Barley | HORVU5Hr1G106110.4 , HORVU5Hr1G106110.5 , HORVU5Hr1G106110.6 , HORVU5Hr1G106110.1 , HORVU5Hr1G106110.2 , HORVU5Hr1G106110.3 , HORVU5Hr1G106110.8 , HORVU5Hr1G106110.9 , HORVU5Hr1G106110.10 , HORVU5Hr1G106110.11 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G340350 | - | - |
| 2 | Sobic.006G163650 | - | - |
| 3 | Sobic.006G108000 | formin, putative, expressed | - |
| 4 | Sobic.007G211400 | polygalacturonase inhibitor 2 precursor, putative, expressed | - |
| 5 | Sobic.004G059100 | Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor, putative, expressed | - |
| 6 | Sobic.009G163700 | fasciclin-like arabinogalactan protein, putative, expressed | - |
| 7 | Sobic.003G282600 | glycosyl transferase 8 domain containing protein, putative, expressed | - |
| 8 | Sobic.003G377200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed | - |
| 9 | Sobic.003G040100 | PHD-finger domain containing protein, putative, expressed | K11380: NuA3 HAT complex component NTO1 |
| 10 | Sobic.006G155200 | TGF-beta receptor, type I/II extracellular region, putative, expressed | - |
| 11 | Sobic.007G019600 | expressed protein | - |
| 12 | Sobic.006G157800 | glycosyl transferase 8 domain containing protein, putative, expressed | - |
| 13 | Sobic.005G017100 | pentatricopeptide, putative, expressed | - |
| 14 | Sobic.002G035500 | CIN-like (ClassII) Subclade 13 TCP(PubMedID : 21444336)@basic helix-loop-helix (bHLH) transcription factor(PubMedID : 23915383)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed | - |
| 15 | Sobic.010G209800 | methyladenine glycosylase, putative, expressed | K01246: DNA-3-methyladenine glycosylase I |
| 16 | Sobic.006G245200 | OsFBX239 - F-box domain containing protein, expressed | - |
| 17 | Sobic.001G494300 | DNA topoisomerase 3 protein, putative, expressed | K03165: DNA topoisomerase III |
| 18 | Sobic.004G336700 | helix-loop-helix DNA-binding domain containing protein, expressed | - |
| 19 | Sobic.003G100200 | TOO MANY MOUTHS precursor, putative, expressed | - |
| 20 | Sobic.001G397900 | "Controlling grain color, orthologous to the maize p1"(PubMedID : 20585750)@"induction of chs, chi, dfr, f3'h 3-deoxyanthocyanidins biosynthesis responsive genes "(PubMedID : 25647576)@MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
Gene co-expression network
Octagon: transcription factors
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