Gene annotation
Transcriptome id Sobic.001G397900.1
Synonym Y1, PFG1, MYB12, yellow seed 1 , ATMYB12, Y; MYB transcripton factor, Sb01g037670
Functional annotation "Controlling grain color, orthologous to the maize p1" (PubMedID : 20585750)
"induction of chs, chi, dfr, f3'h 3-deoxyanthocyanidins biosynthesis responsive genes " (PubMedID : 25647576)
MYB family transcription factor, putative, expressed
UniProt Q8S3Z3 , C5WMJ0
Pfam PF00249 PF06640
Panther DB PTHR10641 PTHR10641:SF203
NCBI CDD -
KEGG Orthology K09422; transcription factor MYB, plant
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G47460 : myb domain protein 12
RAP-DB (Rice) LOC_Os03g19120.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a056586 , Zm00025a049626 , Zm00025a055223 , Zm00025a028009 , Zm00025a038844 , Zm00025a012794 , Zm00025a042466 , Zm00025a009981 , Zm00025a002101 , Zm00025a034206 , Zm00025a034021 , Zm00025a032982 , Zm00025a004957 , Zm00025a013941 , Zm00025a052596 , Zm00025a010442 , Zm00025a036074 , Zm00025a023288 , Zm00025a056908 , Zm00025a005685
Brachypodium KQK00858 , KQK05100 , KQJ95429 , KQK09372 , KQK02077 , KQK05002 , KQJ83761 , KQK09222 , KQK00512 , KQJ90325
Barley HORVU4Hr1G082610.1 , HORVU4Hr1G082610.4 , HORVU3Hr1G019590.1 , HORVU3Hr1G019590.2 , HORVU4Hr1G054420.1 , HORVU4Hr1G054420.3 , HORVU4Hr1G054420.2 , HORVU7Hr1G034630.1 , HORVU7Hr1G034630.2 , HORVU5Hr1G063410.3 , HORVU5Hr1G063410.2 , HORVU5Hr1G063410.1 , HORVU2Hr1G091630.3 , HORVU2Hr1G091630.2 , HORVU3Hr1G016940.1
Wheat TraesCS1A02G252600 , TraesCS7D02G166500 , TraesCS3D02G094500 , TraesCS6A02G344700 , TraesCS2B02G466400 , TraesCS3A02G254500 , TraesCS3A02G254500 , TraesCS7A02G165700 , TraesCS1B02G265400 , TraesCS5D02G225800 , TraesCS4B02G186000 , TraesCS3D02G109800 , TraesCS2B02G387000 , TraesCS3B02G286500 , TraesCS6B02G377400 , TraesCS5A02G111300 , TraesCS5D02G128200 , TraesCS5D02G128200 , TraesCS5A02G217900 , TraesCS3A02G094300 , TraesCS1D02G252300 , TraesCS6D02G327300 , TraesCS7B02G204800 , TraesCS4D02G319700 , TraesCS4D02G187100 , TraesCS2D02G366400 , TraesCS5B02G216900 , TraesCS2A02G370000 , TraesCS3A02G108000 , TraesCS7B02G070400 , TraesCS7D02G300000 , TraesCS7D02G300000 , TraesCS7A02G304500 , TraesCS5A02G495500 , TraesCS3B02G126800 , TraesCS5B02G119300 , TraesCS4B02G323300
Populus -


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cDNA sequences
Sobic.001G397900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G155200 TGF-beta receptor, type I/II extracellular region, putative, expressed -
2 Sobic.007G139000 ZF-HD protein dimerisation region containing protein, expressed -
3 Sobic.003G111600 expressed protein -
4 Sobic.006G163650 - -
5 Sobic.002G101800 OsFBX281 - F-box domain containing protein, expressed -
6 Sobic.004G061600 expressed protein -
7 Sobic.001G303000 zinc finger family protein, putative, expressed -
8 Sobic.003G191800 helix-loop-helix DNA-binding domain containing protein, expressed -
9 Sobic.005G102200 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed -
10 Sobic.002G285525 - -
11 Sobic.001G137200 homeobox domain containing protein, expressed -
12 Sobic.001G103400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed -
13 Sobic.001G483700 Cupin domain containing protein, expressed -
14 Sobic.003G290700 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
15 Sobic.006G186200 exostosin family domain containing protein, expressed -
16 Sobic.003G390300 expressed protein -
17 Sobic.001G460700 expressed protein -
18 Sobic.002G019900 gibberellin receptor GID1L2, putative, expressed -
19 Sobic.002G344100 - -
20 Sobic.004G156600 - -


Gene co-expression network
sample Sobic001G397900 Sobic001G397900 Sobic006G155200 Sobic006G155200 Sobic001G397900--Sobic006G155200 Sobic007G139000 Sobic007G139000 Sobic001G397900--Sobic007G139000 Sobic003G111600 Sobic003G111600 Sobic001G397900--Sobic003G111600 Sobic006G163650 Sobic006G163650 Sobic001G397900--Sobic006G163650 Sobic002G101800 Sobic002G101800 Sobic001G397900--Sobic002G101800 Sobic004G061600 Sobic004G061600 Sobic001G397900--Sobic004G061600 Sobic001G303000 Sobic001G303000 Sobic001G397900--Sobic001G303000 Sobic003G191800 Sobic003G191800 Sobic001G397900--Sobic003G191800 Sobic005G102200 Sobic005G102200 Sobic001G397900--Sobic005G102200 Sobic006G155200--Sobic001G397900 Sobic006G155200--Sobic007G139000 Sobic006G155200--Sobic005G102200 Sobic002G285525 Sobic002G285525 Sobic006G155200--Sobic002G285525 Sobic006G155200--Sobic003G191800 Sobic006G155200--Sobic002G101800 Sobic002G344100 Sobic002G344100 Sobic006G155200--Sobic002G344100 Sobic006G155200--Sobic003G111600 Sobic001G137200 Sobic001G137200 Sobic006G155200--Sobic001G137200 Sobic007G139000--Sobic003G191800 Sobic007G139000--Sobic005G102200 Sobic007G139000--Sobic001G137200 Sobic010G152700 Sobic010G152700 Sobic007G139000--Sobic010G152700 Sobic007G139000--Sobic002G101800 Sobic007G139000--Sobic003G111600 Sobic001G483700 Sobic001G483700 Sobic007G139000--Sobic001G483700 Sobic007G139000--Sobic002G285525 Sobic010G014900 Sobic010G014900 Sobic007G139000--Sobic010G014900 Sobic003G111600--Sobic005G102200 Sobic003G111600--Sobic003G191800 Sobic003G111600--Sobic007G139000 Sobic003G111600--Sobic002G101800 Sobic003G111600--Sobic001G483700 Sobic003G111600--Sobic001G137200 Sobic003G111600--Sobic010G152700 Sobic003G111600--Sobic002G285525 Sobic009G187500 Sobic009G187500 Sobic003G111600--Sobic009G187500 Sobic006G163650--Sobic007G139000 Sobic006G163650--Sobic010G014900 Sobic004G107400 Sobic004G107400 Sobic006G163650--Sobic004G107400 Sobic006G163650--Sobic010G152700 Sobic006G163650--Sobic003G191800 Sobic003G359200 Sobic003G359200 Sobic006G163650--Sobic003G359200 Sobic007G153300 Sobic007G153300 Sobic006G163650--Sobic007G153300 Sobic006G163650--Sobic005G102200 Sobic007G158400 Sobic007G158400 Sobic006G163650--Sobic007G158400 Sobic002G101800--Sobic005G102200 Sobic002G101800--Sobic003G191800 Sobic006G123700 Sobic006G123700 Sobic002G101800--Sobic006G123700 Sobic002G101800--Sobic010G152700 Sobic002G101800--Sobic007G139000 Sobic002G101800--Sobic001G137200 Sobic002G101800--Sobic001G483700 Sobic002G101800--Sobic002G285525 Sobic002G101800--Sobic003G111600 Sobic003G390300 Sobic003G390300 Sobic004G061600--Sobic003G390300 Sobic004G061600--Sobic007G158400 Sobic008G136900 Sobic008G136900 Sobic004G061600--Sobic008G136900 Sobic004G061600--Sobic010G014900 Sobic001G062700 Sobic001G062700 Sobic004G061600--Sobic001G062700 Sobic004G061600--Sobic004G107400 Sobic005G168500 Sobic005G168500 Sobic004G061600--Sobic005G168500 Sobic004G061600--Sobic001G137200 Sobic006G273500 Sobic006G273500 Sobic004G061600--Sobic006G273500 Sobic001G303000--Sobic007G139000 Sobic001G303000--Sobic001G062700 Sobic001G303000--Sobic004G061600 Sobic001G303000--Sobic003G390300 Sobic001G303000--Sobic003G111600 Sobic001G303000--Sobic003G191800 Sobic001G303000--Sobic005G102200 Sobic001G303000--Sobic002G101800 Sobic001G303000--Sobic008G136900 Sobic003G191800--Sobic005G102200 Sobic003G191800--Sobic010G152700 Sobic003G191800--Sobic001G137200 Sobic003G191800--Sobic007G139000 Sobic003G191800--Sobic001G483700 Sobic005G209800 Sobic005G209800 Sobic003G191800--Sobic005G209800 Sobic007G072400 Sobic007G072400 Sobic003G191800--Sobic007G072400 Sobic006G171000 Sobic006G171000 Sobic003G191800--Sobic006G171000 Sobic008G002100 Sobic008G002100 Sobic003G191800--Sobic008G002100 Sobic005G102200--Sobic003G191800 Sobic005G102200--Sobic010G152700 Sobic005G102200--Sobic001G137200 Sobic005G102200--Sobic001G483700 Sobic005G102200--Sobic002G101800 Sobic005G102200--Sobic002G285525 Sobic001G527400 Sobic001G527400 Sobic005G102200--Sobic001G527400 Sobic005G102200--Sobic005G209800 Sobic005G102200--Sobic008G002100
Octagon: transcription factors


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