Gene annotation
Transcriptome id Sobic.003G377200.1
Synonym Sb03g041710
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1B6Q7D5
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF422
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G21470 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os01g65840.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a026572
Brachypodium -
Barley HORVU3Hr1G091310.3 , HORVU3Hr1G091310.2 , HORVU3Hr1G091310.4
Wheat -
Populus -


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cDNA sequences
Sobic.003G377200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G267500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat containing protein, expressed -
2 Sobic.007G208500 expressed protein -
3 Sobic.006G186200 exostosin family domain containing protein, expressed -
4 Sobic.006G163650 - -
5 Sobic.004G180600 expressed protein K18172: COX assembly mitochondrial protein 2
6 Sobic.003G390300 expressed protein -
7 Sobic.009G203400 IQ calmodulin-binding motif family protein, putative, expressed -
8 Sobic.005G076650 - -
9 Sobic.004G156600 - -
10 Sobic.003G040100 PHD-finger domain containing protein, putative, expressed K11380: NuA3 HAT complex component NTO1
11 Sobic.006G245200 OsFBX239 - F-box domain containing protein, expressed -
12 Sobic.004G061600 expressed protein -
13 Sobic.006G273500 expressed protein -
14 Sobic.004G043200 expressed protein -
15 Sobic.004G107400 expressed protein -
16 Sobic.001G062700 GATA zinc finger domain containing protein, expressed -
17 Sobic.007G016000 - -
18 Sobic.009G088401 - -
19 Sobic.004G109500 - -
20 Sobic.003G284500 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22


Gene co-expression network
sample Sobic003G377200 Sobic003G377200 Sobic001G267500 Sobic001G267500 Sobic003G377200--Sobic001G267500 Sobic007G208500 Sobic007G208500 Sobic003G377200--Sobic007G208500 Sobic006G186200 Sobic006G186200 Sobic003G377200--Sobic006G186200 Sobic006G163650 Sobic006G163650 Sobic003G377200--Sobic006G163650 Sobic004G180600 Sobic004G180600 Sobic003G377200--Sobic004G180600 Sobic003G390300 Sobic003G390300 Sobic003G377200--Sobic003G390300 Sobic009G203400 Sobic009G203400 Sobic003G377200--Sobic009G203400 Sobic005G076650 Sobic005G076650 Sobic003G377200--Sobic005G076650 Sobic004G156600 Sobic004G156600 Sobic003G377200--Sobic004G156600 Sobic001G072900 Sobic001G072900 Sobic001G267500--Sobic001G072900 Sobic001G267500--Sobic003G377200 Sobic005G017100 Sobic005G017100 Sobic001G267500--Sobic005G017100 Sobic004G076850 Sobic004G076850 Sobic001G267500--Sobic004G076850 Sobic009G162900 Sobic009G162900 Sobic001G267500--Sobic009G162900 Sobic001G267500--Sobic005G076650 Sobic001G312700 Sobic001G312700 Sobic001G267500--Sobic001G312700 Sobic006G077600 Sobic006G077600 Sobic001G267500--Sobic006G077600 Sobic001G267500--Sobic007G208500 Sobic006G273500 Sobic006G273500 Sobic007G208500--Sobic006G273500 Sobic007G208500--Sobic009G203400 Sobic007G208500--Sobic004G180600 Sobic008G098098 Sobic008G098098 Sobic007G208500--Sobic008G098098 Sobic007G208500--Sobic006G186200 Sobic002G256500 Sobic002G256500 Sobic007G208500--Sobic002G256500 Sobic004G061600 Sobic004G061600 Sobic007G208500--Sobic004G061600 Sobic004G043200 Sobic004G043200 Sobic007G208500--Sobic004G043200 Sobic007G208500--Sobic003G390300 Sobic006G186200--Sobic006G273500 Sobic006G186200--Sobic004G061600 Sobic004G107400 Sobic004G107400 Sobic006G186200--Sobic004G107400 Sobic006G186200--Sobic003G390300 Sobic010G014900 Sobic010G014900 Sobic006G186200--Sobic010G014900 Sobic007G158400 Sobic007G158400 Sobic006G186200--Sobic007G158400 Sobic006G186200--Sobic004G156600 Sobic003G290700 Sobic003G290700 Sobic006G186200--Sobic003G290700 Sobic001G137200 Sobic001G137200 Sobic006G186200--Sobic001G137200 Sobic007G139000 Sobic007G139000 Sobic006G163650--Sobic007G139000 Sobic006G163650--Sobic010G014900 Sobic006G163650--Sobic004G107400 Sobic010G152700 Sobic010G152700 Sobic006G163650--Sobic010G152700 Sobic003G191800 Sobic003G191800 Sobic006G163650--Sobic003G191800 Sobic003G359200 Sobic003G359200 Sobic006G163650--Sobic003G359200 Sobic007G153300 Sobic007G153300 Sobic006G163650--Sobic007G153300 Sobic005G102200 Sobic005G102200 Sobic006G163650--Sobic005G102200 Sobic006G163650--Sobic007G158400 Sobic004G180600--Sobic006G273500 Sobic004G180600--Sobic008G098098 Sobic009G088401 Sobic009G088401 Sobic004G180600--Sobic009G088401 Sobic007G016000 Sobic007G016000 Sobic004G180600--Sobic007G016000 Sobic008G119200 Sobic008G119200 Sobic004G180600--Sobic008G119200 Sobic004G180600--Sobic004G107400 Sobic003G407500 Sobic003G407500 Sobic004G180600--Sobic003G407500 Sobic007G072400 Sobic007G072400 Sobic004G180600--Sobic007G072400 Sobic005G209800 Sobic005G209800 Sobic004G180600--Sobic005G209800 Sobic003G390300--Sobic004G107400 Sobic003G390300--Sobic004G061600 Sobic008G136900 Sobic008G136900 Sobic003G390300--Sobic008G136900 Sobic001G062700 Sobic001G062700 Sobic003G390300--Sobic001G062700 Sobic003G104900 Sobic003G104900 Sobic003G390300--Sobic003G104900 Sobic003G390300--Sobic010G014900 Sobic003G390300--Sobic007G158400 Sobic003G390300--Sobic001G137200 Sobic009G028600 Sobic009G028600 Sobic003G390300--Sobic009G028600 Sobic009G203400--Sobic006G273500 Sobic001G104400 Sobic001G104400 Sobic009G203400--Sobic001G104400 Sobic009G203400--Sobic007G208500 Sobic009G203400--Sobic004G180600 Sobic009G203400--Sobic008G098098 Sobic009G203400--Sobic006G186200 Sobic009G203400--Sobic004G061600 Sobic009G203400--Sobic008G119200 Sobic009G203400--Sobic004G107400 Sobic005G076650--Sobic008G098098 Sobic005G076650--Sobic007G016000 Sobic005G076650--Sobic009G088401 Sobic005G076650--Sobic004G043200 Sobic005G076650--Sobic007G072400 Sobic005G076650--Sobic010G152700 Sobic005G076650--Sobic008G119200 Sobic001G516200 Sobic001G516200 Sobic005G076650--Sobic001G516200 Sobic005G076650--Sobic006G273500 Sobic004G156600--Sobic003G390300 Sobic002G299800 Sobic002G299800 Sobic004G156600--Sobic002G299800 Sobic004G156600--Sobic006G186200 Sobic004G156600--Sobic004G061600 Sobic004G156600--Sobic004G107400 Sobic004G156600--Sobic008G136900 Sobic004G156600--Sobic001G062700 Sobic003G040100 Sobic003G040100 Sobic004G156600--Sobic003G040100 Sobic007G076800 Sobic007G076800 Sobic004G156600--Sobic007G076800
Octagon: transcription factors


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