Gene annotation
Transcriptome id Sobic.003G284500.1
Synonym Sb03g033580
Functional annotation mediator of RNA polymerase II transcription subunit 22, putative, expressed
UniProt C5XJ11
Pfam PF06179
Panther DB PTHR12434
NCBI CDD KOG3304; Surfeit family protein 5
KEGG Orthology K15139; mediator of RNA polymerase II transcription subunit 22
Gene Ontology GO:0016592; mediator complex GO:0006357regulation of transcription by RNA polymerase II GO:0001104transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT1G16430 : Surfeit locus protein 5 subunit 22 of Mediator complex
RAP-DB (Rice) LOC_Os08g37480.2 : mediator of RNA polymerase II transcription subunit 22, putative, expressed
MaizeGDB (Corn) Zm00025a035568 , Zm00025a021899
Brachypodium -
Barley HORVU3Hr1G007080.1 , HORVU3Hr1G007080.2 , HORVU3Hr1G007080.3 , HORVU3Hr1G007080.4 , HORVU3Hr1G007080.5 , HORVU3Hr1G007080.6 , HORVU3Hr1G007080.7
Wheat TraesCS3A02G035900 , TraesCS3D02G044100 , TraesCS3B02G048100
Populus -


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cDNA sequences
Sobic.003G284500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G128500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
2 Sobic.007G072400 phosphoribosyl transferase, putative, expressed -
3 Sobic.004G109500 - -
4 Sobic.009G088401 - -
5 Sobic.009G050100 ATKINESIN-13A/KINESIN-13A, putative, expressed K11091: U1 small nuclear ribonucleoprotein A
6 Sobic.002G173600 UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative, expressed -
7 Sobic.004G107400 expressed protein -
8 Sobic.003G390300 expressed protein -
9 Sobic.010G152700 helix-loop-helix DNA-binding domain containing protein, expressed -
10 Sobic.004G043200 expressed protein -
11 Sobic.001G516200 expressed protein -
12 Sobic.003G191800 helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.006G171000 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL7 - SBP-box gene family member, expressed -
14 Sobic.002G340350 - -
15 Sobic.005G076650 - -
16 Sobic.006G144800 expressed protein -
17 Sobic.010G097400 thiol-disulphide oxidoreductase DCC, putative, expressed -
18 Sobic.008G002100 zinc finger, C3HC4 type domain containing protein -
19 Sobic.010G014900 expressed protein -
20 Sobic.001G527400 - -


Gene co-expression network
sample Sobic003G284500 Sobic003G284500 Sobic003G128500 Sobic003G128500 Sobic003G284500--Sobic003G128500 Sobic007G072400 Sobic007G072400 Sobic003G284500--Sobic007G072400 Sobic004G109500 Sobic004G109500 Sobic003G284500--Sobic004G109500 Sobic009G088401 Sobic009G088401 Sobic003G284500--Sobic009G088401 Sobic009G050100 Sobic009G050100 Sobic003G284500--Sobic009G050100 Sobic002G173600 Sobic002G173600 Sobic003G284500--Sobic002G173600 Sobic004G107400 Sobic004G107400 Sobic003G284500--Sobic004G107400 Sobic003G390300 Sobic003G390300 Sobic003G284500--Sobic003G390300 Sobic010G152700 Sobic010G152700 Sobic003G284500--Sobic010G152700 Sobic003G128500--Sobic003G284500 Sobic010G267650 Sobic010G267650 Sobic003G128500--Sobic010G267650 Sobic003G359200 Sobic003G359200 Sobic003G128500--Sobic003G359200 Sobic010G097400 Sobic010G097400 Sobic003G128500--Sobic010G097400 Sobic003G128500--Sobic009G050100 Sobic010G040200 Sobic010G040200 Sobic003G128500--Sobic010G040200 Sobic003G377200 Sobic003G377200 Sobic003G128500--Sobic003G377200 Sobic003G148500 Sobic003G148500 Sobic003G128500--Sobic003G148500 Sobic009G235300 Sobic009G235300 Sobic003G128500--Sobic009G235300 Sobic001G527400 Sobic001G527400 Sobic007G072400--Sobic001G527400 Sobic006G171000 Sobic006G171000 Sobic007G072400--Sobic006G171000 Sobic008G002100 Sobic008G002100 Sobic007G072400--Sobic008G002100 Sobic005G209800 Sobic005G209800 Sobic007G072400--Sobic005G209800 Sobic007G183000 Sobic007G183000 Sobic007G072400--Sobic007G183000 Sobic008G023000 Sobic008G023000 Sobic007G072400--Sobic008G023000 Sobic004G226300 Sobic004G226300 Sobic007G072400--Sobic004G226300 Sobic003G173032 Sobic003G173032 Sobic007G072400--Sobic003G173032 Sobic001G137200 Sobic001G137200 Sobic007G072400--Sobic001G137200 Sobic004G109500--Sobic009G088401 Sobic004G109500--Sobic007G072400 Sobic004G180600 Sobic004G180600 Sobic004G109500--Sobic004G180600 Sobic004G043200 Sobic004G043200 Sobic004G109500--Sobic004G043200 Sobic007G016000 Sobic007G016000 Sobic004G109500--Sobic007G016000 Sobic007G158400 Sobic007G158400 Sobic004G109500--Sobic007G158400 Sobic005G076650 Sobic005G076650 Sobic004G109500--Sobic005G076650 Sobic004G061600 Sobic004G061600 Sobic004G109500--Sobic004G061600 Sobic004G109500--Sobic004G107400 Sobic009G088401--Sobic008G023000 Sobic009G088401--Sobic005G209800 Sobic009G088401--Sobic006G171000 Sobic009G088401--Sobic008G002100 Sobic009G088401--Sobic003G173032 Sobic009G088401--Sobic001G527400 Sobic009G088401--Sobic007G072400 Sobic009G088401--Sobic004G226300 Sobic009G088401--Sobic007G183000 Sobic009G050100--Sobic003G284500 Sobic001G150800 Sobic001G150800 Sobic009G050100--Sobic001G150800 Sobic009G050100--Sobic003G128500 Sobic006G177100 Sobic006G177100 Sobic009G050100--Sobic006G177100 Sobic002G270100 Sobic002G270100 Sobic009G050100--Sobic002G270100 Sobic009G050100--Sobic010G097400 Sobic009G050100--Sobic003G377200 Sobic009G050100--Sobic003G148500 Sobic001G210700 Sobic001G210700 Sobic009G050100--Sobic001G210700 Sobic002G173600--Sobic001G527400 Sobic002G048250 Sobic002G048250 Sobic002G173600--Sobic002G048250 Sobic002G173600--Sobic008G002100 Sobic002G173600--Sobic008G023000 Sobic002G173600--Sobic007G183000 Sobic002G173600--Sobic004G226300 Sobic005G231800 Sobic005G231800 Sobic002G173600--Sobic005G231800 Sobic002G173600--Sobic005G209800 Sobic002G173600--Sobic003G173032 Sobic004G107400--Sobic006G171000 Sobic010G014900 Sobic010G014900 Sobic004G107400--Sobic010G014900 Sobic004G107400--Sobic001G137200 Sobic004G107400--Sobic003G390300 Sobic004G107400--Sobic005G209800 Sobic002G078850 Sobic002G078850 Sobic004G107400--Sobic002G078850 Sobic003G104900 Sobic003G104900 Sobic004G107400--Sobic003G104900 Sobic004G107400--Sobic005G231800 Sobic004G107400--Sobic008G002100 Sobic003G390300--Sobic004G107400 Sobic003G390300--Sobic004G061600 Sobic008G136900 Sobic008G136900 Sobic003G390300--Sobic008G136900 Sobic001G062700 Sobic001G062700 Sobic003G390300--Sobic001G062700 Sobic003G390300--Sobic003G104900 Sobic003G390300--Sobic010G014900 Sobic003G390300--Sobic007G158400 Sobic003G390300--Sobic001G137200 Sobic009G028600 Sobic009G028600 Sobic003G390300--Sobic009G028600 Sobic010G152700--Sobic001G137200 Sobic010G152700--Sobic006G171000 Sobic010G152700--Sobic008G002100 Sobic010G152700--Sobic001G527400 Sobic010G152700--Sobic005G209800 Sobic010G152700--Sobic007G183000 Sobic010G152700--Sobic008G023000 Sobic010G152700--Sobic004G226300 Sobic002G285525 Sobic002G285525 Sobic010G152700--Sobic002G285525
Octagon: transcription factors


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