Gene annotation
Transcriptome id Sobic.009G050100.1
Synonym U1A, Sb09g004270
Functional annotation ATKINESIN-13A/KINESIN-13A, putative, expressed
UniProt C5Z0J1
Pfam PF00076
Panther DB PTHR10501 PTHR10501:SF17
NCBI CDD KOG4206; Spliceosomal protein snRNP-U1A/U2B
KEGG Orthology K11091; U1 small nuclear ribonucleoprotein A
Gene Ontology GO:0003676; nucleic acid binding GO:0017069snRNA binding GO:0000398mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT2G47580 : spliceosomal protein U1A
RAP-DB (Rice) LOC_Os05g06280.1 : ATKINESIN-13A/KINESIN-13A, putative, expressed
MaizeGDB (Corn) Zm00025a043001
Brachypodium KQK07405
Barley -
Wheat TraesCS1B02G127700 , TraesCS1B02G127700 , TraesCS1D02G105000 , TraesCS1A02G096000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G284500 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
2 Sobic.001G150800 expressed protein -
3 Sobic.003G128500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
4 Sobic.006G177100 expressed protein K03671: thioredoxin 1
5 Sobic.002G270100 expressed protein K14795: ribosomal RNA-processing protein 36
6 Sobic.010G097400 thiol-disulphide oxidoreductase DCC, putative, expressed -
7 Sobic.003G377200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.003G148500 endoglucanase, putative, expressed -
9 Sobic.001G210700 HNH endonuclease domain-containing protein, putative, expressed -
10 Sobic.004G109500 - -
11 Sobic.003G390300 expressed protein -
12 Sobic.009G225900 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
13 Sobic.001G157500 expressed protein -
14 Sobic.004G180600 expressed protein K18172: COX assembly mitochondrial protein 2
15 Sobic.001G062700 GATA zinc finger domain containing protein, expressed -
16 Sobic.010G008000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.002G366700 expressed protein -
18 Sobic.001G402701 - -
19 Sobic.010G027800 Brix domain containing protein, putative, expressed K14846: ribosome production factor 1
20 Sobic.004G107400 expressed protein -


Gene co-expression network
sample Sobic009G050100 Sobic009G050100 Sobic003G284500 Sobic003G284500 Sobic009G050100--Sobic003G284500 Sobic001G150800 Sobic001G150800 Sobic009G050100--Sobic001G150800 Sobic003G128500 Sobic003G128500 Sobic009G050100--Sobic003G128500 Sobic006G177100 Sobic006G177100 Sobic009G050100--Sobic006G177100 Sobic002G270100 Sobic002G270100 Sobic009G050100--Sobic002G270100 Sobic010G097400 Sobic010G097400 Sobic009G050100--Sobic010G097400 Sobic003G377200 Sobic003G377200 Sobic009G050100--Sobic003G377200 Sobic003G148500 Sobic003G148500 Sobic009G050100--Sobic003G148500 Sobic001G210700 Sobic001G210700 Sobic009G050100--Sobic001G210700 Sobic003G284500--Sobic003G128500 Sobic007G072400 Sobic007G072400 Sobic003G284500--Sobic007G072400 Sobic004G109500 Sobic004G109500 Sobic003G284500--Sobic004G109500 Sobic009G088401 Sobic009G088401 Sobic003G284500--Sobic009G088401 Sobic003G284500--Sobic009G050100 Sobic002G173600 Sobic002G173600 Sobic003G284500--Sobic002G173600 Sobic004G107400 Sobic004G107400 Sobic003G284500--Sobic004G107400 Sobic003G390300 Sobic003G390300 Sobic003G284500--Sobic003G390300 Sobic010G152700 Sobic010G152700 Sobic003G284500--Sobic010G152700 Sobic001G150800--Sobic009G050100 Sobic001G150800--Sobic004G109500 Sobic001G150800--Sobic010G097400 Sobic001G157500 Sobic001G157500 Sobic001G150800--Sobic001G157500 Sobic001G150800--Sobic003G284500 Sobic001G150800--Sobic003G377200 Sobic004G180600 Sobic004G180600 Sobic001G150800--Sobic004G180600 Sobic004G043200 Sobic004G043200 Sobic001G150800--Sobic004G043200 Sobic006G255800 Sobic006G255800 Sobic001G150800--Sobic006G255800 Sobic003G128500--Sobic003G284500 Sobic010G267650 Sobic010G267650 Sobic003G128500--Sobic010G267650 Sobic003G359200 Sobic003G359200 Sobic003G128500--Sobic003G359200 Sobic003G128500--Sobic010G097400 Sobic003G128500--Sobic009G050100 Sobic010G040200 Sobic010G040200 Sobic003G128500--Sobic010G040200 Sobic003G128500--Sobic003G377200 Sobic003G128500--Sobic003G148500 Sobic009G235300 Sobic009G235300 Sobic003G128500--Sobic009G235300 Sobic006G177100--Sobic010G097400 Sobic002G339400 Sobic002G339400 Sobic006G177100--Sobic002G339400 Sobic004G288400 Sobic004G288400 Sobic006G177100--Sobic004G288400 Sobic002G366700 Sobic002G366700 Sobic006G177100--Sobic002G366700 Sobic010G014300 Sobic010G014300 Sobic006G177100--Sobic010G014300 Sobic006G177100--Sobic009G050100 Sobic001G494150 Sobic001G494150 Sobic006G177100--Sobic001G494150 Sobic006G177100--Sobic003G284500 Sobic006G258400 Sobic006G258400 Sobic006G177100--Sobic006G258400 Sobic002G270100--Sobic009G050100 Sobic002G270100--Sobic003G284500 Sobic010G050400 Sobic010G050400 Sobic002G270100--Sobic010G050400 Sobic002G248001 Sobic002G248001 Sobic002G270100--Sobic002G248001 Sobic010G061100 Sobic010G061100 Sobic002G270100--Sobic010G061100 Sobic002G270100--Sobic001G157500 Sobic002G283800 Sobic002G283800 Sobic002G270100--Sobic002G283800 Sobic002G270100--Sobic004G043200 Sobic003G211500 Sobic003G211500 Sobic002G270100--Sobic003G211500 Sobic010G097400--Sobic006G177100 Sobic010G097400--Sobic009G235300 Sobic010G097400--Sobic004G109500 Sobic010G097400--Sobic002G366700 Sobic010G097400--Sobic003G284500 Sobic010G097400--Sobic003G128500 Sobic010G097400--Sobic003G377200 Sobic010G097400--Sobic001G150800 Sobic010G097400--Sobic004G180600 Sobic001G267500 Sobic001G267500 Sobic003G377200--Sobic001G267500 Sobic007G208500 Sobic007G208500 Sobic003G377200--Sobic007G208500 Sobic006G186200 Sobic006G186200 Sobic003G377200--Sobic006G186200 Sobic006G163650 Sobic006G163650 Sobic003G377200--Sobic006G163650 Sobic003G377200--Sobic004G180600 Sobic003G377200--Sobic003G390300 Sobic009G203400 Sobic009G203400 Sobic003G377200--Sobic009G203400 Sobic005G076650 Sobic005G076650 Sobic003G377200--Sobic005G076650 Sobic004G156600 Sobic004G156600 Sobic003G377200--Sobic004G156600 Sobic001G062700 Sobic001G062700 Sobic003G148500--Sobic001G062700 Sobic003G148500--Sobic006G186200 Sobic003G148500--Sobic003G390300 Sobic003G148500--Sobic003G359200 Sobic003G415500 Sobic003G415500 Sobic003G148500--Sobic003G415500 Sobic003G148500--Sobic004G107400 Sobic003G148500--Sobic004G156600 Sobic004G061600 Sobic004G061600 Sobic003G148500--Sobic004G061600 Sobic008G136900 Sobic008G136900 Sobic003G148500--Sobic008G136900 Sobic001G210700--Sobic009G050100 Sobic002G396200 Sobic002G396200 Sobic001G210700--Sobic002G396200 Sobic005G108801 Sobic005G108801 Sobic001G210700--Sobic005G108801 Sobic001G210700--Sobic006G177100 Sobic009G225900 Sobic009G225900 Sobic001G210700--Sobic009G225900 Sobic007G216600 Sobic007G216600 Sobic001G210700--Sobic007G216600 Sobic001G171500 Sobic001G171500 Sobic001G210700--Sobic001G171500 Sobic004G207700 Sobic004G207700 Sobic001G210700--Sobic004G207700 Sobic009G228300 Sobic009G228300 Sobic001G210700--Sobic009G228300
Octagon: transcription factors


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