Gene annotation
Transcriptome id Sobic.010G027800.1
Synonym MEE49, Sb10g002530
Functional annotation Brix domain containing protein, putative, expressed
UniProt C5Z3G3
Pfam PF04427
Panther DB PTHR22734 PTHR22734:SF3
NCBI CDD KOG2780; Ribosome biogenesis protein RPF1, contains IMP4 domain
KEGG Orthology K14846; ribosome production factor 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G01560 : Ribosomal RNA processing Brix domain protein
RAP-DB (Rice) LOC_Os06g04600.2 : Brix domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a038305 , Zm00025a032670
Brachypodium KQK19951
Barley HORVU7Hr1G018900.5 , HORVU7Hr1G018900.6 , HORVU7Hr1G018900.9 , HORVU7Hr1G018900.10 , HORVU7Hr1G018900.8 , HORVU7Hr1G018900.11 , HORVU7Hr1G018900.12 , HORVU7Hr1G018900.13 , HORVU7Hr1G018900.15 , HORVU7Hr1G018900.14 , HORVU7Hr1G018900.17 , HORVU7Hr1G018900.16 , HORVU7Hr1G018900.19 , HORVU7Hr1G018900.18 , HORVU7Hr1G018900.24 , HORVU7Hr1G018900.25 , HORVU7Hr1G018900.26 , HORVU7Hr1G018900.20 , HORVU7Hr1G018900.21 , HORVU7Hr1G018900.22 , HORVU7Hr1G018900.23
Wheat TraesCS7D02G072700 , TraesCS4A02G375600 , TraesCS7A02G077100
Populus -


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cDNA sequences
Sobic.010G027800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G402701 - -
2 Sobic.006G157300 expressed protein -
3 Sobic.003G081400 Ser/Thr protein kinase, putative, expressed -
4 Sobic.003G283750 - -
5 Sobic.004G320300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
6 Sobic.006G169400 expressed protein -
7 Sobic.008G031600 expressed protein -
8 Sobic.003G201400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
9 Sobic.003G142900 chloroplast ATP synthase a chain precursor, putative, expressed K02108: ATPF0A, F-type H+-transporting ATPase subunit a
10 Sobic.001G460700 expressed protein -
11 Sobic.005G022600 PME/invertase inhibitor, putative, expressed -
12 Sobic.009G088401 - -
13 Sobic.010G045300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.001G148600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
15 Sobic.004G109500 - -
16 Sobic.010G029200 OsMADS75 - MADS-box family gene with M-alpha type-box, expressed -
17 Sobic.010G208300 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
18 Sobic.007G072400 phosphoribosyl transferase, putative, expressed -
19 Sobic.009G039400 jacalin-like lectin domain containing protein, expressed -
20 Sobic.004G310700 glutaredoxin 2, putative, expressed -


Gene co-expression network
sample Sobic010G027800 Sobic010G027800 Sobic001G402701 Sobic001G402701 Sobic010G027800--Sobic001G402701 Sobic006G157300 Sobic006G157300 Sobic010G027800--Sobic006G157300 Sobic003G081400 Sobic003G081400 Sobic010G027800--Sobic003G081400 Sobic003G283750 Sobic003G283750 Sobic010G027800--Sobic003G283750 Sobic004G320300 Sobic004G320300 Sobic010G027800--Sobic004G320300 Sobic006G169400 Sobic006G169400 Sobic010G027800--Sobic006G169400 Sobic008G031600 Sobic008G031600 Sobic010G027800--Sobic008G031600 Sobic003G201400 Sobic003G201400 Sobic010G027800--Sobic003G201400 Sobic003G142900 Sobic003G142900 Sobic010G027800--Sobic003G142900 Sobic001G148600 Sobic001G148600 Sobic001G402701--Sobic001G148600 Sobic010G259200 Sobic010G259200 Sobic001G402701--Sobic010G259200 Sobic003G083700 Sobic003G083700 Sobic001G402701--Sobic003G083700 Sobic007G206700 Sobic007G206700 Sobic001G402701--Sobic007G206700 Sobic003G104900 Sobic003G104900 Sobic001G402701--Sobic003G104900 Sobic010G002850 Sobic010G002850 Sobic001G402701--Sobic010G002850 Sobic003G390300 Sobic003G390300 Sobic001G402701--Sobic003G390300 Sobic010G119600 Sobic010G119600 Sobic001G402701--Sobic010G119600 Sobic001G402701--Sobic003G142900 Sobic001G190000 Sobic001G190000 Sobic006G157300--Sobic001G190000 SobicK044200 SobicK044200 Sobic006G157300--SobicK044200 Sobic002G206200 Sobic002G206200 Sobic006G157300--Sobic002G206200 Sobic009G154000 Sobic009G154000 Sobic006G157300--Sobic009G154000 Sobic010G224800 Sobic010G224800 Sobic006G157300--Sobic010G224800 Sobic003G109400 Sobic003G109400 Sobic006G157300--Sobic003G109400 Sobic006G172651 Sobic006G172651 Sobic006G157300--Sobic006G172651 Sobic001G261440 Sobic001G261440 Sobic006G157300--Sobic001G261440 Sobic010G114400 Sobic010G114400 Sobic006G157300--Sobic010G114400 Sobic009G039400 Sobic009G039400 Sobic003G081400--Sobic009G039400 Sobic003G081400--Sobic003G201400 Sobic006G167200 Sobic006G167200 Sobic003G081400--Sobic006G167200 Sobic010G045300 Sobic010G045300 Sobic003G081400--Sobic010G045300 Sobic010G208300 Sobic010G208300 Sobic003G081400--Sobic010G208300 Sobic005G022600 Sobic005G022600 Sobic003G081400--Sobic005G022600 Sobic010G029200 Sobic010G029200 Sobic003G081400--Sobic010G029200 Sobic010G068300 Sobic010G068300 Sobic003G081400--Sobic010G068300 Sobic003G081400--Sobic008G031600 Sobic003G283750--Sobic010G029200 Sobic003G283750--Sobic003G142900 Sobic001G460700 Sobic001G460700 Sobic003G283750--Sobic001G460700 Sobic003G283750--Sobic010G208300 Sobic003G283750--Sobic009G039400 Sobic003G283750--Sobic010G068300 Sobic003G283750--Sobic003G081400 Sobic003G283750--Sobic010G045300 Sobic003G283750--Sobic005G022600 Sobic001G200500 Sobic001G200500 Sobic004G320300--Sobic001G200500 Sobic009G031100 Sobic009G031100 Sobic004G320300--Sobic009G031100 Sobic002G156300 Sobic002G156300 Sobic004G320300--Sobic002G156300 Sobic004G320300--Sobic003G109400 Sobic007G001300 Sobic007G001300 Sobic004G320300--Sobic007G001300 Sobic004G320300--Sobic010G224800 Sobic004G320300--Sobic010G114400 Sobic004G320300--Sobic003G201400 Sobic004G320300--Sobic002G206200 Sobic003G397000 Sobic003G397000 Sobic006G169400--Sobic003G397000 Sobic004G310700 Sobic004G310700 Sobic006G169400--Sobic004G310700 Sobic002G320200 Sobic002G320200 Sobic006G169400--Sobic002G320200 Sobic006G169400--Sobic003G081400 Sobic006G169400--Sobic008G031600 Sobic006G169400--Sobic001G402701 Sobic006G169400--Sobic001G460700 Sobic001G531900 Sobic001G531900 Sobic006G169400--Sobic001G531900 Sobic006G169400--Sobic003G201400 Sobic008G031600--Sobic003G081400 Sobic008G031600--Sobic003G201400 Sobic008G031600--Sobic010G045300 Sobic008G031600--Sobic010G029200 Sobic010G122533 Sobic010G122533 Sobic008G031600--Sobic010G122533 Sobic008G031600--Sobic009G039400 Sobic008G031600--Sobic010G208300 Sobic008G031600--Sobic005G022600 Sobic008G031600--Sobic006G167200 Sobic003G201400--Sobic010G114400 Sobic003G201400--Sobic002G156300 Sobic003G201400--Sobic010G224800 Sobic003G201400--Sobic009G031100 Sobic003G201400--Sobic003G109400 Sobic006G197000 Sobic006G197000 Sobic003G201400--Sobic006G197000 Sobic003G201400--Sobic007G001300 Sobic003G201400--Sobic006G172651 Sobic003G201400--Sobic003G081400 Sobic003G142900--Sobic010G029200 Sobic008G023000 Sobic008G023000 Sobic003G142900--Sobic008G023000 Sobic008G002100 Sobic008G002100 Sobic003G142900--Sobic008G002100 Sobic001G527400 Sobic001G527400 Sobic003G142900--Sobic001G527400 Sobic004G226300 Sobic004G226300 Sobic003G142900--Sobic004G226300 Sobic007G183000 Sobic007G183000 Sobic003G142900--Sobic007G183000 Sobic005G209800 Sobic005G209800 Sobic003G142900--Sobic005G209800 Sobic003G173032 Sobic003G173032 Sobic003G142900--Sobic003G173032 Sobic005G231800 Sobic005G231800 Sobic003G142900--Sobic005G231800
Octagon: transcription factors


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