Gene annotation
Transcriptome id Sobic.001G267500.1,Sobic.001G267500.2
Synonym EMB2745, Sb01g026260
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PPR repeat containing protein, expressed
UniProt C5WP30 , A0A1Z5S7Q8
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF725
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G39710 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g10420.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a009549 , Zm00025a031189 , Zm00025a015860 , Zm00025a010891 , Zm00025a035103 , Zm00025a015859 , Zm00025a028838 , Zm00025a057228 , Zm00025a013038 , Zm00025a017966
Brachypodium KQJ96115
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G072900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.003G377200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.005G017100 pentatricopeptide, putative, expressed -
4 Sobic.004G076850 - -
5 Sobic.009G162900 expressed protein -
6 Sobic.005G076650 - -
7 Sobic.001G312700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@selenium-binding protein-like, putative, expressed -
8 Sobic.006G077600 phosphatidylinositol N-acetylglucosaminyltransferase subunit P, putative, expressed K03861: PIGP, GPI19, phosphatidylinositol N-acetylglucosaminyltransferase subunit P
9 Sobic.007G208500 expressed protein -
10 Sobic.010G042200 Rf1, mitochondrial precursor, putative, expressed -
11 Sobic.006G278900 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@auxin response factor, putative, expressed -
12 Sobic.009G228300 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
13 Sobic.004G043200 expressed protein -
14 Sobic.007G016000 - -
15 Sobic.002G264900 RNA recognition motif containing protein, putative, expressed -
16 Sobic.002G219800 expressed protein -
17 Sobic.002G363700 expressed protein -
18 Sobic.005G034600 expressed protein -
19 Sobic.004G059100 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor, putative, expressed -
20 Sobic.004G180600 expressed protein K18172: COX assembly mitochondrial protein 2


Gene co-expression network
sample Sobic001G267500 Sobic001G267500 Sobic001G072900 Sobic001G072900 Sobic001G267500--Sobic001G072900 Sobic003G377200 Sobic003G377200 Sobic001G267500--Sobic003G377200 Sobic005G017100 Sobic005G017100 Sobic001G267500--Sobic005G017100 Sobic004G076850 Sobic004G076850 Sobic001G267500--Sobic004G076850 Sobic009G162900 Sobic009G162900 Sobic001G267500--Sobic009G162900 Sobic005G076650 Sobic005G076650 Sobic001G267500--Sobic005G076650 Sobic001G312700 Sobic001G312700 Sobic001G267500--Sobic001G312700 Sobic006G077600 Sobic006G077600 Sobic001G267500--Sobic006G077600 Sobic007G208500 Sobic007G208500 Sobic001G267500--Sobic007G208500 Sobic001G072900--Sobic001G267500 Sobic001G487000 Sobic001G487000 Sobic001G072900--Sobic001G487000 Sobic001G072900--Sobic006G077600 Sobic002G363700 Sobic002G363700 Sobic001G072900--Sobic002G363700 Sobic001G072900--Sobic003G377200 Sobic001G541601 Sobic001G541601 Sobic001G072900--Sobic001G541601 Sobic001G072900--Sobic007G208500 Sobic006G278900 Sobic006G278900 Sobic001G072900--Sobic006G278900 Sobic009G228300 Sobic009G228300 Sobic001G072900--Sobic009G228300 Sobic003G377200--Sobic001G267500 Sobic003G377200--Sobic007G208500 Sobic006G186200 Sobic006G186200 Sobic003G377200--Sobic006G186200 Sobic006G163650 Sobic006G163650 Sobic003G377200--Sobic006G163650 Sobic004G180600 Sobic004G180600 Sobic003G377200--Sobic004G180600 Sobic003G390300 Sobic003G390300 Sobic003G377200--Sobic003G390300 Sobic009G203400 Sobic009G203400 Sobic003G377200--Sobic009G203400 Sobic003G377200--Sobic005G076650 Sobic004G156600 Sobic004G156600 Sobic003G377200--Sobic004G156600 Sobic005G017100--Sobic001G267500 Sobic005G017100--Sobic003G377200 Sobic005G017100--Sobic006G163650 Sobic001G247000 Sobic001G247000 Sobic005G017100--Sobic001G247000 Sobic010G042200 Sobic010G042200 Sobic005G017100--Sobic010G042200 Sobic004G059100 Sobic004G059100 Sobic005G017100--Sobic004G059100 Sobic003G100200 Sobic003G100200 Sobic005G017100--Sobic003G100200 Sobic002G340350 Sobic002G340350 Sobic005G017100--Sobic002G340350 Sobic005G017100--Sobic001G312700 Sobic004G076850--Sobic006G077600 Sobic002G264900 Sobic002G264900 Sobic004G076850--Sobic002G264900 Sobic004G076850--Sobic001G267500 Sobic004G270200 Sobic004G270200 Sobic004G076850--Sobic004G270200 Sobic004G204000 Sobic004G204000 Sobic004G076850--Sobic004G204000 Sobic004G076850--Sobic001G072900 Sobic005G123400 Sobic005G123400 Sobic004G076850--Sobic005G123400 Sobic002G313100 Sobic002G313100 Sobic004G076850--Sobic002G313100 Sobic002G380700 Sobic002G380700 Sobic004G076850--Sobic002G380700 Sobic009G162900--Sobic001G267500 Sobic009G162900--Sobic003G377200 Sobic009G162900--Sobic001G072900 Sobic009G162900--Sobic007G208500 Sobic001G062700 Sobic001G062700 Sobic009G162900--Sobic001G062700 Sobic004G161400 Sobic004G161400 Sobic009G162900--Sobic004G161400 Sobic004G153700 Sobic004G153700 Sobic009G162900--Sobic004G153700 Sobic007G038000 Sobic007G038000 Sobic009G162900--Sobic007G038000 Sobic007G092300 Sobic007G092300 Sobic009G162900--Sobic007G092300 Sobic008G098098 Sobic008G098098 Sobic005G076650--Sobic008G098098 Sobic007G016000 Sobic007G016000 Sobic005G076650--Sobic007G016000 Sobic009G088401 Sobic009G088401 Sobic005G076650--Sobic009G088401 Sobic004G043200 Sobic004G043200 Sobic005G076650--Sobic004G043200 Sobic007G072400 Sobic007G072400 Sobic005G076650--Sobic007G072400 Sobic010G152700 Sobic010G152700 Sobic005G076650--Sobic010G152700 Sobic008G119200 Sobic008G119200 Sobic005G076650--Sobic008G119200 Sobic001G516200 Sobic001G516200 Sobic005G076650--Sobic001G516200 Sobic006G273500 Sobic006G273500 Sobic005G076650--Sobic006G273500 Sobic007G130000 Sobic007G130000 Sobic001G312700--Sobic007G130000 Sobic001G312700--Sobic001G267500 Sobic001G312700--Sobic003G377200 Sobic006G157800 Sobic006G157800 Sobic001G312700--Sobic006G157800 Sobic001G312700--Sobic001G072900 Sobic008G020500 Sobic008G020500 Sobic001G312700--Sobic008G020500 Sobic001G312700--Sobic004G043200 Sobic001G312700--Sobic006G163650 Sobic001G312700--Sobic002G264900 Sobic006G077600--Sobic002G313100 Sobic006G077600--Sobic001G072900 Sobic006G077600--Sobic001G487000 Sobic006G077600--Sobic001G541601 Sobic010G196300 Sobic010G196300 Sobic006G077600--Sobic010G196300 Sobic006G077600--Sobic004G076850 Sobic003G293100 Sobic003G293100 Sobic006G077600--Sobic003G293100 Sobic008G166100 Sobic008G166100 Sobic006G077600--Sobic008G166100 Sobic009G201000 Sobic009G201000 Sobic006G077600--Sobic009G201000 Sobic007G208500--Sobic006G273500 Sobic007G208500--Sobic009G203400 Sobic007G208500--Sobic004G180600 Sobic007G208500--Sobic008G098098 Sobic007G208500--Sobic006G186200 Sobic002G256500 Sobic002G256500 Sobic007G208500--Sobic002G256500 Sobic004G061600 Sobic004G061600 Sobic007G208500--Sobic004G061600 Sobic007G208500--Sobic004G043200 Sobic007G208500--Sobic003G390300
Octagon: transcription factors


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