Gene annotation
Transcriptome id Sobic.002G363700.3,Sobic.002G363700.2,Sobic.002G363700.1
Synonym Sb02g038340
Functional annotation expressed protein
UniProt A0A1B6QFB4 , A0A1W0W750 , A0A1B6QFB6
Pfam PF01844 PF00271 PF04851 PF01844 PF00271 PF01844 PF00271 PF00176
Panther DB PTHR10799 PTHR10799:SF741
NCBI CDD KOG1000; Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily
KEGG Orthology -
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding GO:0004519endonuclease activity GO:0003676nucleic acid binding GO:0004519endonuclease activity GO:0003676nucleic acid binding GO:0004519endonuclease activity GO:0003676nucleic acid binding GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT5G07810 : SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
RAP-DB (Rice) LOC_Os07g40730.1 : SNF2 domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a048657
Brachypodium KQK15412
Barley HORVU2Hr1G034200.15 , HORVU2Hr1G034200.14 , HORVU2Hr1G034200.17 , HORVU2Hr1G034200.16 , HORVU2Hr1G034200.11 , HORVU2Hr1G034200.10 , HORVU2Hr1G034200.13 , HORVU2Hr1G034200.12 , HORVU2Hr1G034200.19 , HORVU2Hr1G034200.18 , HORVU2Hr1G034200.51 , HORVU2Hr1G034200.50 , HORVU2Hr1G034200.1 , HORVU2Hr1G034200.3 , HORVU2Hr1G034200.2 , HORVU2Hr1G034200.5 , HORVU2Hr1G034200.4 , HORVU2Hr1G034200.7 , HORVU2Hr1G034200.6 , HORVU2Hr1G034200.9 , HORVU2Hr1G034200.8 , HORVU2Hr1G034200.29 , HORVU2Hr1G034200.44 , HORVU2Hr1G034200.45 , HORVU2Hr1G034200.42 , HORVU2Hr1G034200.43 , HORVU2Hr1G034200.40 , HORVU2Hr1G034200.41 , HORVU2Hr1G034200.48 , HORVU2Hr1G034200.49 , HORVU2Hr1G034200.33 , HORVU2Hr1G034200.32 , HORVU2Hr1G034200.31 , HORVU2Hr1G034200.30 , HORVU2Hr1G034200.37 , HORVU2Hr1G034200.36 , HORVU2Hr1G034200.35 , HORVU2Hr1G034200.34 , HORVU2Hr1G034200.39 , HORVU2Hr1G034200.38 , HORVU2Hr1G034200.20 , HORVU2Hr1G034200.21 , HORVU2Hr1G034200.22 , HORVU2Hr1G034200.23 , HORVU2Hr1G034200.24 , HORVU2Hr1G034200.25 , HORVU2Hr1G034200.26 , HORVU2Hr1G034200.27 , HORVU2Hr1G034200.28
Wheat TraesCS2B02G208400 , TraesCS2B02G208400 , TraesCS2B02G208400 , TraesCS4B02G105900 , TraesCS2A02G181900 , TraesCS2A02G181900 , TraesCS2D02G189600 , TraesCS2D02G189600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G487000 expressed protein -
2 Sobic.001G541601 - -
3 Sobic.006G278900 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@auxin response factor, putative, expressed -
4 Sobic.001G072900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.007G208500 expressed protein -
6 Sobic.010G128900 beta-galactosidase precursor, putative, expressed -
7 Sobic.002G256500 expressed protein -
8 Sobic.008G098098 - -
9 Sobic.004G180600 expressed protein K18172: COX assembly mitochondrial protein 2
10 Sobic.006G273500 expressed protein -
11 Sobic.009G203400 IQ calmodulin-binding motif family protein, putative, expressed -
12 Sobic.002G049500 LTPL77 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
13 Sobic.006G077600 phosphatidylinositol N-acetylglucosaminyltransferase subunit P, putative, expressed K03861: PIGP, GPI19, phosphatidylinositol N-acetylglucosaminyltransferase subunit P
14 Sobic.009G145800 expressed protein -
15 Sobic.001G000900 expressed protein -
16 Sobic.006G186200 exostosin family domain containing protein, expressed -
17 Sobic.007G016000 - -
18 Sobic.004G097700 homeobox domain containing protein, expressed -
19 Sobic.003G377200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.010G096500 expressed protein -


Gene co-expression network
sample Sobic002G363700 Sobic002G363700 Sobic001G487000 Sobic001G487000 Sobic002G363700--Sobic001G487000 Sobic001G541601 Sobic001G541601 Sobic002G363700--Sobic001G541601 Sobic006G278900 Sobic006G278900 Sobic002G363700--Sobic006G278900 Sobic001G072900 Sobic001G072900 Sobic002G363700--Sobic001G072900 Sobic007G208500 Sobic007G208500 Sobic002G363700--Sobic007G208500 Sobic010G128900 Sobic010G128900 Sobic002G363700--Sobic010G128900 Sobic002G256500 Sobic002G256500 Sobic002G363700--Sobic002G256500 Sobic008G098098 Sobic008G098098 Sobic002G363700--Sobic008G098098 Sobic004G180600 Sobic004G180600 Sobic002G363700--Sobic004G180600 Sobic001G487000--Sobic002G363700 Sobic001G487000--Sobic001G541601 Sobic001G487000--Sobic006G278900 Sobic001G487000--Sobic001G072900 Sobic006G077600 Sobic006G077600 Sobic001G487000--Sobic006G077600 Sobic001G487000--Sobic007G208500 Sobic010G096500 Sobic010G096500 Sobic001G487000--Sobic010G096500 Sobic003G054100 Sobic003G054100 Sobic001G487000--Sobic003G054100 Sobic010G196300 Sobic010G196300 Sobic001G487000--Sobic010G196300 Sobic006G264700 Sobic006G264700 Sobic001G541601--Sobic006G264700 Sobic001G541601--Sobic010G096500 Sobic001G229100 Sobic001G229100 Sobic001G541601--Sobic001G229100 Sobic003G270700 Sobic003G270700 Sobic001G541601--Sobic003G270700 Sobic001G541601--Sobic010G196300 Sobic008G139500 Sobic008G139500 Sobic001G541601--Sobic008G139500 Sobic001G541601--Sobic001G487000 Sobic004G323500 Sobic004G323500 Sobic001G541601--Sobic004G323500 Sobic004G025900 Sobic004G025900 Sobic001G541601--Sobic004G025900 Sobic006G278900--Sobic001G487000 Sobic006G278900--Sobic002G363700 Sobic006G278900--Sobic001G541601 Sobic005G076650 Sobic005G076650 Sobic006G278900--Sobic005G076650 Sobic006G278900--Sobic006G077600 Sobic006G278900--Sobic008G098098 Sobic006G278900--Sobic002G256500 Sobic006G278900--Sobic007G208500 Sobic006G278900--Sobic001G072900 Sobic001G267500 Sobic001G267500 Sobic001G072900--Sobic001G267500 Sobic001G072900--Sobic001G487000 Sobic001G072900--Sobic006G077600 Sobic001G072900--Sobic002G363700 Sobic003G377200 Sobic003G377200 Sobic001G072900--Sobic003G377200 Sobic001G072900--Sobic001G541601 Sobic001G072900--Sobic007G208500 Sobic001G072900--Sobic006G278900 Sobic009G228300 Sobic009G228300 Sobic001G072900--Sobic009G228300 Sobic006G273500 Sobic006G273500 Sobic007G208500--Sobic006G273500 Sobic009G203400 Sobic009G203400 Sobic007G208500--Sobic009G203400 Sobic007G208500--Sobic004G180600 Sobic007G208500--Sobic008G098098 Sobic006G186200 Sobic006G186200 Sobic007G208500--Sobic006G186200 Sobic007G208500--Sobic002G256500 Sobic004G061600 Sobic004G061600 Sobic007G208500--Sobic004G061600 Sobic004G043200 Sobic004G043200 Sobic007G208500--Sobic004G043200 Sobic003G390300 Sobic003G390300 Sobic007G208500--Sobic003G390300 Sobic010G128900--Sobic008G098098 Sobic007G016000 Sobic007G016000 Sobic010G128900--Sobic007G016000 Sobic010G128900--Sobic002G363700 Sobic010G128900--Sobic004G180600 Sobic010G128900--Sobic002G256500 Sobic010G128900--Sobic006G273500 Sobic010G128900--Sobic005G076650 Sobic008G119200 Sobic008G119200 Sobic010G128900--Sobic008G119200 Sobic001G000900 Sobic001G000900 Sobic010G128900--Sobic001G000900 Sobic002G256500--Sobic008G098098 Sobic002G256500--Sobic006G273500 Sobic002G256500--Sobic008G119200 Sobic004G221150 Sobic004G221150 Sobic002G256500--Sobic004G221150 Sobic009G088401 Sobic009G088401 Sobic002G256500--Sobic009G088401 Sobic002G256500--Sobic007G016000 Sobic002G256500--Sobic001G000900 Sobic002G285525 Sobic002G285525 Sobic002G256500--Sobic002G285525 Sobic009G223700 Sobic009G223700 Sobic002G256500--Sobic009G223700 Sobic008G098098--Sobic008G119200 Sobic008G098098--Sobic001G000900 Sobic008G098098--Sobic006G273500 Sobic008G098098--Sobic009G223700 Sobic005G231800 Sobic005G231800 Sobic008G098098--Sobic005G231800 Sobic004G226300 Sobic004G226300 Sobic008G098098--Sobic004G226300 Sobic007G183000 Sobic007G183000 Sobic008G098098--Sobic007G183000 Sobic008G098098--Sobic009G088401 Sobic001G527400 Sobic001G527400 Sobic008G098098--Sobic001G527400 Sobic004G180600--Sobic006G273500 Sobic004G180600--Sobic008G098098 Sobic004G180600--Sobic009G088401 Sobic004G180600--Sobic007G016000 Sobic004G180600--Sobic008G119200 Sobic004G107400 Sobic004G107400 Sobic004G180600--Sobic004G107400 Sobic003G407500 Sobic003G407500 Sobic004G180600--Sobic003G407500 Sobic007G072400 Sobic007G072400 Sobic004G180600--Sobic007G072400 Sobic005G209800 Sobic005G209800 Sobic004G180600--Sobic005G209800
Octagon: transcription factors


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