Gene annotation
Transcriptome id Sobic.001G072900.2
Synonym Sb01g006560
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1Z5S533
Pfam PF14432 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF43
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G22070 : pentatricopeptide (PPR) repeat-containing protein
RAP-DB (Rice) LOC_Os03g56400.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK12964
Barley HORVU5Hr1G099080.5 , HORVU5Hr1G099080.4 , HORVU5Hr1G099080.3 , HORVU5Hr1G099080.1 , HORVU5Hr1G099080.2
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G267500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat containing protein, expressed -
2 Sobic.001G487000 expressed protein -
3 Sobic.006G077600 phosphatidylinositol N-acetylglucosaminyltransferase subunit P, putative, expressed K03861: PIGP, GPI19, phosphatidylinositol N-acetylglucosaminyltransferase subunit P
4 Sobic.002G363700 expressed protein -
5 Sobic.003G377200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.001G541601 - -
7 Sobic.007G208500 expressed protein -
8 Sobic.006G278900 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@auxin response factor, putative, expressed -
9 Sobic.009G228300 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
10 Sobic.001G312700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@selenium-binding protein-like, putative, expressed -
11 Sobic.005G076650 - -
12 Sobic.004G180600 expressed protein K18172: COX assembly mitochondrial protein 2
13 Sobic.007G016000 - -
14 Sobic.003G054100 expressed protein -
15 Sobic.010G128900 beta-galactosidase precursor, putative, expressed -
16 Sobic.004G076850 - -
17 Sobic.005G034600 expressed protein -
18 Sobic.009G162900 expressed protein -
19 Sobic.002G264900 RNA recognition motif containing protein, putative, expressed -
20 Sobic.009G203400 IQ calmodulin-binding motif family protein, putative, expressed -


Gene co-expression network
sample Sobic001G072900 Sobic001G072900 Sobic001G267500 Sobic001G267500 Sobic001G072900--Sobic001G267500 Sobic001G487000 Sobic001G487000 Sobic001G072900--Sobic001G487000 Sobic006G077600 Sobic006G077600 Sobic001G072900--Sobic006G077600 Sobic002G363700 Sobic002G363700 Sobic001G072900--Sobic002G363700 Sobic003G377200 Sobic003G377200 Sobic001G072900--Sobic003G377200 Sobic001G541601 Sobic001G541601 Sobic001G072900--Sobic001G541601 Sobic007G208500 Sobic007G208500 Sobic001G072900--Sobic007G208500 Sobic006G278900 Sobic006G278900 Sobic001G072900--Sobic006G278900 Sobic009G228300 Sobic009G228300 Sobic001G072900--Sobic009G228300 Sobic001G267500--Sobic001G072900 Sobic001G267500--Sobic003G377200 Sobic005G017100 Sobic005G017100 Sobic001G267500--Sobic005G017100 Sobic004G076850 Sobic004G076850 Sobic001G267500--Sobic004G076850 Sobic009G162900 Sobic009G162900 Sobic001G267500--Sobic009G162900 Sobic005G076650 Sobic005G076650 Sobic001G267500--Sobic005G076650 Sobic001G312700 Sobic001G312700 Sobic001G267500--Sobic001G312700 Sobic001G267500--Sobic006G077600 Sobic001G267500--Sobic007G208500 Sobic001G487000--Sobic002G363700 Sobic001G487000--Sobic001G541601 Sobic001G487000--Sobic006G278900 Sobic001G487000--Sobic001G072900 Sobic001G487000--Sobic006G077600 Sobic001G487000--Sobic007G208500 Sobic010G096500 Sobic010G096500 Sobic001G487000--Sobic010G096500 Sobic003G054100 Sobic003G054100 Sobic001G487000--Sobic003G054100 Sobic010G196300 Sobic010G196300 Sobic001G487000--Sobic010G196300 Sobic002G313100 Sobic002G313100 Sobic006G077600--Sobic002G313100 Sobic006G077600--Sobic001G072900 Sobic006G077600--Sobic001G487000 Sobic006G077600--Sobic001G541601 Sobic006G077600--Sobic010G196300 Sobic006G077600--Sobic004G076850 Sobic003G293100 Sobic003G293100 Sobic006G077600--Sobic003G293100 Sobic008G166100 Sobic008G166100 Sobic006G077600--Sobic008G166100 Sobic009G201000 Sobic009G201000 Sobic006G077600--Sobic009G201000 Sobic002G363700--Sobic001G487000 Sobic002G363700--Sobic001G541601 Sobic002G363700--Sobic006G278900 Sobic002G363700--Sobic001G072900 Sobic002G363700--Sobic007G208500 Sobic010G128900 Sobic010G128900 Sobic002G363700--Sobic010G128900 Sobic002G256500 Sobic002G256500 Sobic002G363700--Sobic002G256500 Sobic008G098098 Sobic008G098098 Sobic002G363700--Sobic008G098098 Sobic004G180600 Sobic004G180600 Sobic002G363700--Sobic004G180600 Sobic003G377200--Sobic001G267500 Sobic003G377200--Sobic007G208500 Sobic006G186200 Sobic006G186200 Sobic003G377200--Sobic006G186200 Sobic006G163650 Sobic006G163650 Sobic003G377200--Sobic006G163650 Sobic003G377200--Sobic004G180600 Sobic003G390300 Sobic003G390300 Sobic003G377200--Sobic003G390300 Sobic009G203400 Sobic009G203400 Sobic003G377200--Sobic009G203400 Sobic003G377200--Sobic005G076650 Sobic004G156600 Sobic004G156600 Sobic003G377200--Sobic004G156600 Sobic006G264700 Sobic006G264700 Sobic001G541601--Sobic006G264700 Sobic001G541601--Sobic010G096500 Sobic001G229100 Sobic001G229100 Sobic001G541601--Sobic001G229100 Sobic003G270700 Sobic003G270700 Sobic001G541601--Sobic003G270700 Sobic001G541601--Sobic010G196300 Sobic008G139500 Sobic008G139500 Sobic001G541601--Sobic008G139500 Sobic001G541601--Sobic001G487000 Sobic004G323500 Sobic004G323500 Sobic001G541601--Sobic004G323500 Sobic004G025900 Sobic004G025900 Sobic001G541601--Sobic004G025900 Sobic006G273500 Sobic006G273500 Sobic007G208500--Sobic006G273500 Sobic007G208500--Sobic009G203400 Sobic007G208500--Sobic004G180600 Sobic007G208500--Sobic008G098098 Sobic007G208500--Sobic006G186200 Sobic007G208500--Sobic002G256500 Sobic004G061600 Sobic004G061600 Sobic007G208500--Sobic004G061600 Sobic004G043200 Sobic004G043200 Sobic007G208500--Sobic004G043200 Sobic007G208500--Sobic003G390300 Sobic006G278900--Sobic001G487000 Sobic006G278900--Sobic002G363700 Sobic006G278900--Sobic001G541601 Sobic006G278900--Sobic005G076650 Sobic006G278900--Sobic006G077600 Sobic006G278900--Sobic008G098098 Sobic006G278900--Sobic002G256500 Sobic006G278900--Sobic007G208500 Sobic006G278900--Sobic001G072900 Sobic009G228300--Sobic001G072900 Sobic004G172600 Sobic004G172600 Sobic009G228300--Sobic004G172600 Sobic005G034600 Sobic005G034600 Sobic009G228300--Sobic005G034600 Sobic009G228300--Sobic003G054100 Sobic009G228300--Sobic001G267500 Sobic009G228300--Sobic001G312700 Sobic010G018900 Sobic010G018900 Sobic009G228300--Sobic010G018900 Sobic007G130000 Sobic007G130000 Sobic009G228300--Sobic007G130000 Sobic009G228300--Sobic004G076850
Octagon: transcription factors


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