Gene annotation
Transcriptome id Sobic.003G054100.1
Synonym Sb03g004660
Functional annotation expressed protein
UniProt C5XNH7
Pfam -
Panther DB PTHR36354
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G56430 : -
RAP-DB (Rice) LOC_Os01g07382.1 : expressed protein
MaizeGDB (Corn) Zm00025a023296 , Zm00025a035700
Brachypodium KQK02868
Barley HORVU3Hr1G017300.2 , HORVU3Hr1G017300.3 , HORVU3Hr1G017300.4
Wheat TraesCS3D02G096200 , TraesCS3B02G111500 , TraesCS3A02G095800
Populus -


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cDNA sequences
Sobic.003G054100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G172600 tetratricopeptide repeat containing protein, putative, expressed -
2 Sobic.001G487000 expressed protein -
3 Sobic.003G049800 protein of unknown function domain containing protein, expressed -
4 Sobic.010G231700 expressed protein -
5 Sobic.006G255800 - -
6 Sobic.003G395500 expressed protein -
7 Sobic.001G072900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.009G228300 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
9 Sobic.003G095200 glycosyltransferase protein, putative, expressed -
10 Sobic.002G030400 SWIM zinc finger family protein, putative, expressed -
11 Sobic.003G286200 expressed protein -
12 Sobic.002G363700 expressed protein -
13 Sobic.002G124900 expressed protein K02138: ATPeF0D, ATP5H, F-type H+-transporting ATPase subunit d
14 Sobic.001G282200 ribosomal protein L35, putative, expressed -
15 Sobic.002G380700 expressed protein -
16 Sobic.005G034600 expressed protein -
17 Sobic.004G097700 homeobox domain containing protein, expressed -
18 Sobic.002G413500 F-actin-capping protein subunit alpha, putative, expressed K10364: capping protein (actin filament) muscle Z-line, alpha
19 Sobic.007G172300 fiber protein Fb14, putative, expressed K03938: NADH dehydrogenase (ubiquinone) Fe-S protein 5
20 Sobic.010G176900 expressed protein -


Gene co-expression network
sample Sobic003G054100 Sobic003G054100 Sobic004G172600 Sobic004G172600 Sobic003G054100--Sobic004G172600 Sobic001G487000 Sobic001G487000 Sobic003G054100--Sobic001G487000 Sobic003G049800 Sobic003G049800 Sobic003G054100--Sobic003G049800 Sobic010G231700 Sobic010G231700 Sobic003G054100--Sobic010G231700 Sobic006G255800 Sobic006G255800 Sobic003G054100--Sobic006G255800 Sobic003G395500 Sobic003G395500 Sobic003G054100--Sobic003G395500 Sobic001G072900 Sobic001G072900 Sobic003G054100--Sobic001G072900 Sobic009G228300 Sobic009G228300 Sobic003G054100--Sobic009G228300 Sobic003G095200 Sobic003G095200 Sobic003G054100--Sobic003G095200 Sobic004G172600--Sobic003G054100 Sobic004G172600--Sobic009G228300 Sobic005G034600 Sobic005G034600 Sobic004G172600--Sobic005G034600 Sobic004G172600--Sobic001G072900 Sobic009G243900 Sobic009G243900 Sobic004G172600--Sobic009G243900 Sobic001G171500 Sobic001G171500 Sobic004G172600--Sobic001G171500 Sobic004G172600--Sobic001G487000 Sobic001G513100 Sobic001G513100 Sobic004G172600--Sobic001G513100 Sobic001G150800 Sobic001G150800 Sobic004G172600--Sobic001G150800 Sobic002G363700 Sobic002G363700 Sobic001G487000--Sobic002G363700 Sobic001G541601 Sobic001G541601 Sobic001G487000--Sobic001G541601 Sobic006G278900 Sobic006G278900 Sobic001G487000--Sobic006G278900 Sobic001G487000--Sobic001G072900 Sobic006G077600 Sobic006G077600 Sobic001G487000--Sobic006G077600 Sobic007G208500 Sobic007G208500 Sobic001G487000--Sobic007G208500 Sobic010G096500 Sobic010G096500 Sobic001G487000--Sobic010G096500 Sobic001G487000--Sobic003G054100 Sobic010G196300 Sobic010G196300 Sobic001G487000--Sobic010G196300 Sobic003G049800--Sobic010G231700 Sobic002G352200 Sobic002G352200 Sobic003G049800--Sobic002G352200 Sobic002G124900 Sobic002G124900 Sobic003G049800--Sobic002G124900 Sobic003G074900 Sobic003G074900 Sobic003G049800--Sobic003G074900 Sobic003G016300 Sobic003G016300 Sobic003G049800--Sobic003G016300 Sobic007G159700 Sobic007G159700 Sobic003G049800--Sobic007G159700 Sobic006G271000 Sobic006G271000 Sobic003G049800--Sobic006G271000 Sobic009G206700 Sobic009G206700 Sobic003G049800--Sobic009G206700 Sobic006G124300 Sobic006G124300 Sobic003G049800--Sobic006G124300 Sobic010G231700--Sobic002G352200 Sobic010G231700--Sobic002G124900 Sobic009G215300 Sobic009G215300 Sobic010G231700--Sobic009G215300 Sobic010G231700--Sobic003G049800 Sobic002G246800 Sobic002G246800 Sobic010G231700--Sobic002G246800 Sobic003G335300 Sobic003G335300 Sobic010G231700--Sobic003G335300 Sobic002G186500 Sobic002G186500 Sobic010G231700--Sobic002G186500 Sobic007G013900 Sobic007G013900 Sobic010G231700--Sobic007G013900 Sobic010G231700--Sobic003G016300 Sobic001G013600 Sobic001G013600 Sobic006G255800--Sobic001G013600 Sobic006G255800--Sobic003G054100 Sobic004G180600 Sobic004G180600 Sobic006G255800--Sobic004G180600 Sobic002G293900 Sobic002G293900 Sobic006G255800--Sobic002G293900 Sobic010G027800 Sobic010G027800 Sobic006G255800--Sobic010G027800 Sobic006G245200 Sobic006G245200 Sobic006G255800--Sobic006G245200 Sobic009G050100 Sobic009G050100 Sobic006G255800--Sobic009G050100 Sobic006G255800--Sobic001G150800 Sobic004G109500 Sobic004G109500 Sobic006G255800--Sobic004G109500 Sobic007G172300 Sobic007G172300 Sobic003G395500--Sobic007G172300 Sobic009G015000 Sobic009G015000 Sobic003G395500--Sobic009G015000 Sobic004G099500 Sobic004G099500 Sobic003G395500--Sobic004G099500 Sobic004G259700 Sobic004G259700 Sobic003G395500--Sobic004G259700 Sobic003G187100 Sobic003G187100 Sobic003G395500--Sobic003G187100 Sobic001G239400 Sobic001G239400 Sobic003G395500--Sobic001G239400 Sobic002G005400 Sobic002G005400 Sobic003G395500--Sobic002G005400 Sobic005G198300 Sobic005G198300 Sobic003G395500--Sobic005G198300 Sobic006G003000 Sobic006G003000 Sobic003G395500--Sobic006G003000 Sobic001G267500 Sobic001G267500 Sobic001G072900--Sobic001G267500 Sobic001G072900--Sobic001G487000 Sobic001G072900--Sobic006G077600 Sobic001G072900--Sobic002G363700 Sobic003G377200 Sobic003G377200 Sobic001G072900--Sobic003G377200 Sobic001G072900--Sobic001G541601 Sobic001G072900--Sobic007G208500 Sobic001G072900--Sobic006G278900 Sobic001G072900--Sobic009G228300 Sobic009G228300--Sobic001G072900 Sobic009G228300--Sobic004G172600 Sobic009G228300--Sobic005G034600 Sobic009G228300--Sobic003G054100 Sobic009G228300--Sobic001G267500 Sobic001G312700 Sobic001G312700 Sobic009G228300--Sobic001G312700 Sobic010G018900 Sobic010G018900 Sobic009G228300--Sobic010G018900 Sobic007G130000 Sobic007G130000 Sobic009G228300--Sobic007G130000 Sobic004G076850 Sobic004G076850 Sobic009G228300--Sobic004G076850 Sobic009G076800 Sobic009G076800 Sobic003G095200--Sobic009G076800 Sobic004G161400 Sobic004G161400 Sobic003G095200--Sobic004G161400 Sobic001G189500 Sobic001G189500 Sobic003G095200--Sobic001G189500 Sobic005G035000 Sobic005G035000 Sobic003G095200--Sobic005G035000 Sobic002G005200 Sobic002G005200 Sobic003G095200--Sobic002G005200 Sobic001G005000 Sobic001G005000 Sobic003G095200--Sobic001G005000 Sobic001G302300 Sobic001G302300 Sobic003G095200--Sobic001G302300 Sobic003G095200--Sobic003G054100 Sobic004G153700 Sobic004G153700 Sobic003G095200--Sobic004G153700
Octagon: transcription factors


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