Gene annotation
Transcriptome id Sobic.007G172300.1
Synonym Sb07g024460
Functional annotation fiber protein Fb14, putative, expressed
UniProt C5YNA5
Pfam PF10200
Panther DB PTHR15224
NCBI CDD -
KEGG Orthology K03938; NADH dehydrogenase (ubiquinone) Fe-S protein 5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G62790 : NADH-ubiquinone oxidoreductase-related
RAP-DB (Rice) LOC_Os08g44250.1 : fiber protein Fb14, putative, expressed
MaizeGDB (Corn) Zm00025a005628
Brachypodium KQJ99666
Barley HORVU7Hr1G058490.3 , HORVU7Hr1G058490.2 , HORVU7Hr1G058490.1
Wheat TraesCS7D02G277200 , TraesCS7B02G174900 , TraesCS7A02G277200
Populus -


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cDNA sequences
Sobic.007G172300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G395500 expressed protein -
2 Sobic.009G015000 expressed protein -
3 Sobic.003G187100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.003G057366 - K11254: histone H4
5 Sobic.004G128000 expressed protein -
6 Sobic.004G259700 60S ribosomal protein L31, putative, expressed K02910: RP-L31e, large subunit ribosomal protein L31e
7 Sobic.001G416900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
8 Sobic.004G099500 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
9 Sobic.001G416800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
10 Sobic.009G123000 expressed protein -
11 Sobic.009G167500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
12 Sobic.003G127600 ubiquitin-conjugating enzyme, putative, expressed K06688: UBE2C, ubiquitin-conjugating enzyme E2 C
13 Sobic.002G005400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
14 Sobic.007G168400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G338966 - -
16 Sobic.010G057100 expressed protein K02983: RP-S30e, small subunit ribosomal protein S30e
17 Sobic.001G417000 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
18 Sobic.002G050400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@LTPL78 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.007G005600 expressed protein -
20 Sobic.006G244800 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein


Gene co-expression network
sample Sobic007G172300 Sobic007G172300 Sobic003G395500 Sobic003G395500 Sobic007G172300--Sobic003G395500 Sobic009G015000 Sobic009G015000 Sobic007G172300--Sobic009G015000 Sobic003G187100 Sobic003G187100 Sobic007G172300--Sobic003G187100 Sobic003G057366 Sobic003G057366 Sobic007G172300--Sobic003G057366 Sobic004G128000 Sobic004G128000 Sobic007G172300--Sobic004G128000 Sobic004G259700 Sobic004G259700 Sobic007G172300--Sobic004G259700 Sobic001G416900 Sobic001G416900 Sobic007G172300--Sobic001G416900 Sobic004G099500 Sobic004G099500 Sobic007G172300--Sobic004G099500 Sobic001G416800 Sobic001G416800 Sobic007G172300--Sobic001G416800 Sobic003G395500--Sobic007G172300 Sobic003G395500--Sobic009G015000 Sobic003G395500--Sobic004G099500 Sobic003G395500--Sobic004G259700 Sobic003G395500--Sobic003G187100 Sobic001G239400 Sobic001G239400 Sobic003G395500--Sobic001G239400 Sobic002G005400 Sobic002G005400 Sobic003G395500--Sobic002G005400 Sobic005G198300 Sobic005G198300 Sobic003G395500--Sobic005G198300 Sobic006G003000 Sobic006G003000 Sobic003G395500--Sobic006G003000 Sobic010G057100 Sobic010G057100 Sobic009G015000--Sobic010G057100 Sobic009G015000--Sobic004G099500 Sobic009G015000--Sobic004G128000 Sobic009G015000--Sobic007G172300 Sobic004G335600 Sobic004G335600 Sobic009G015000--Sobic004G335600 Sobic003G322532 Sobic003G322532 Sobic009G015000--Sobic003G322532 Sobic002G253000 Sobic002G253000 Sobic009G015000--Sobic002G253000 Sobic009G015000--Sobic003G057366 Sobic009G015000--Sobic003G395500 Sobic003G187100--Sobic007G172300 Sobic003G187100--Sobic003G395500 Sobic003G187100--Sobic004G259700 Sobic009G167500 Sobic009G167500 Sobic003G187100--Sobic009G167500 Sobic003G187100--Sobic009G015000 Sobic003G187100--Sobic003G057366 Sobic001G041000 Sobic001G041000 Sobic003G187100--Sobic001G041000 Sobic003G187100--Sobic004G128000 Sobic003G187100--Sobic004G099500 Sobic003G057366--Sobic009G167500 Sobic003G057366--Sobic010G057100 Sobic003G057366--Sobic004G099500 Sobic003G057366--Sobic001G416900 Sobic003G057366--Sobic009G015000 Sobic003G057366--Sobic001G416800 Sobic003G057366--Sobic007G172300 Sobic002G050400 Sobic002G050400 Sobic003G057366--Sobic002G050400 Sobic001G009700 Sobic001G009700 Sobic003G057366--Sobic001G009700 Sobic004G128000--Sobic009G015000 Sobic004G128000--Sobic010G057100 Sobic004G128000--Sobic004G099500 Sobic004G128000--Sobic007G172300 Sobic009G206700 Sobic009G206700 Sobic004G128000--Sobic009G206700 Sobic007G045700 Sobic007G045700 Sobic004G128000--Sobic007G045700 Sobic004G128000--Sobic002G253000 Sobic003G338966 Sobic003G338966 Sobic004G128000--Sobic003G338966 Sobic009G177700 Sobic009G177700 Sobic004G128000--Sobic009G177700 Sobic004G259700--Sobic001G416900 Sobic004G259700--Sobic009G167500 Sobic009G123000 Sobic009G123000 Sobic004G259700--Sobic009G123000 Sobic004G259700--Sobic004G099500 Sobic004G259700--Sobic001G416800 Sobic003G127600 Sobic003G127600 Sobic004G259700--Sobic003G127600 Sobic004G259700--Sobic007G172300 Sobic004G259700--Sobic003G057366 Sobic007G168400 Sobic007G168400 Sobic004G259700--Sobic007G168400 Sobic001G416900--Sobic001G416800 Sobic001G416900--Sobic003G127600 Sobic001G417000 Sobic001G417000 Sobic001G416900--Sobic001G417000 Sobic002G059200 Sobic002G059200 Sobic001G416900--Sobic002G059200 Sobic001G416900--Sobic009G123000 Sobic002G209300 Sobic002G209300 Sobic001G416900--Sobic002G209300 Sobic002G403400 Sobic002G403400 Sobic001G416900--Sobic002G403400 Sobic002G056300 Sobic002G056300 Sobic001G416900--Sobic002G056300 Sobic003G300701 Sobic003G300701 Sobic001G416900--Sobic003G300701 Sobic004G099500--Sobic010G057100 Sobic004G099500--Sobic004G335600 Sobic004G099500--Sobic009G015000 Sobic004G099500--Sobic003G338966 Sobic008G172100 Sobic008G172100 Sobic004G099500--Sobic008G172100 Sobic004G099500--Sobic007G045700 Sobic004G099500--Sobic003G057366 Sobic004G271400 Sobic004G271400 Sobic004G099500--Sobic004G271400 Sobic004G099500--Sobic003G322532 Sobic001G416800--Sobic003G127600 Sobic001G416800--Sobic001G416900 Sobic001G416800--Sobic002G056300 Sobic001G416800--Sobic002G059200 Sobic001G416800--Sobic002G403400 Sobic001G416800--Sobic009G123000 Sobic003G350100 Sobic003G350100 Sobic001G416800--Sobic003G350100 Sobic008G061000 Sobic008G061000 Sobic001G416800--Sobic008G061000 Sobic004G227000 Sobic004G227000 Sobic001G416800--Sobic004G227000
Octagon: transcription factors


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