Gene annotation
Transcriptome id Sobic.003G127600.1
Synonym Sb03g010800, UBC19
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt A0A1B6Q2V0
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF44
NCBI CDD KOG0421; Ubiquitin-protein ligase
KEGG Orthology K06688; UBE2C, ubiquitin-conjugating enzyme E2 C
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G20060 : ubiquitin-conjugating enzyme19
RAP-DB (Rice) LOC_Os01g16650.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a024086 , Zm00025a035239
Brachypodium KQK03855
Barley HORVU3Hr1G038430.3 , HORVU3Hr1G038430.2 , HORVU3Hr1G038430.1 , HORVU3Hr1G038430.4
Wheat TraesCS3B02G216000 , TraesCS3B02G216000 , TraesCS3A02G186500 , TraesCS3D02G190400 , TraesCS3D02G190400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G416800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
2 Sobic.009G123000 expressed protein -
3 Sobic.001G416900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
4 Sobic.002G056300 AT hook-containing DNA-binding protein, putative, expressed K11275: histone H1/5
5 Sobic.002G059200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
6 Sobic.004G227000 expressed protein -
7 Sobic.008G061000 expressed protein -
8 Sobic.004G128600 salt stress root protein RS1, putative, expressed -
9 Sobic.002G403400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
10 Sobic.009G155500 cytochrome P450, putative, expressed -
11 Sobic.004G329100 gibberellin 2-beta-dioxygenase 7, putative, expressed -
12 Sobic.010G161300 receptor-like kinase, putative, expressed -
13 Sobic.001G148600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
14 Sobic.003G350100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
15 Sobic.001G200500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed -
16 Sobic.006G197000 heavy-metal-associated domain-containing protein, putative, expressed -
17 Sobic.005G198300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.002G209300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.001G193400 DUF538 domain containing protein, putative, expressed -
20 Sobic.003G201400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -


Gene co-expression network
sample Sobic003G127600 Sobic003G127600 Sobic001G416800 Sobic001G416800 Sobic003G127600--Sobic001G416800 Sobic009G123000 Sobic009G123000 Sobic003G127600--Sobic009G123000 Sobic001G416900 Sobic001G416900 Sobic003G127600--Sobic001G416900 Sobic002G056300 Sobic002G056300 Sobic003G127600--Sobic002G056300 Sobic002G059200 Sobic002G059200 Sobic003G127600--Sobic002G059200 Sobic004G227000 Sobic004G227000 Sobic003G127600--Sobic004G227000 Sobic008G061000 Sobic008G061000 Sobic003G127600--Sobic008G061000 Sobic004G128600 Sobic004G128600 Sobic003G127600--Sobic004G128600 Sobic002G403400 Sobic002G403400 Sobic003G127600--Sobic002G403400 Sobic001G416800--Sobic003G127600 Sobic001G416800--Sobic001G416900 Sobic001G416800--Sobic002G056300 Sobic001G416800--Sobic002G059200 Sobic001G416800--Sobic002G403400 Sobic001G416800--Sobic009G123000 Sobic003G350100 Sobic003G350100 Sobic001G416800--Sobic003G350100 Sobic001G416800--Sobic008G061000 Sobic001G416800--Sobic004G227000 Sobic009G123000--Sobic003G127600 Sobic009G123000--Sobic001G416800 Sobic005G198300 Sobic005G198300 Sobic009G123000--Sobic005G198300 Sobic006G003000 Sobic006G003000 Sobic009G123000--Sobic006G003000 Sobic009G123000--Sobic001G416900 Sobic001G148600 Sobic001G148600 Sobic009G123000--Sobic001G148600 Sobic009G123000--Sobic008G061000 Sobic009G155500 Sobic009G155500 Sobic009G123000--Sobic009G155500 Sobic010G161300 Sobic010G161300 Sobic009G123000--Sobic010G161300 Sobic001G416900--Sobic001G416800 Sobic001G416900--Sobic003G127600 Sobic001G417000 Sobic001G417000 Sobic001G416900--Sobic001G417000 Sobic001G416900--Sobic002G059200 Sobic001G416900--Sobic009G123000 Sobic002G209300 Sobic002G209300 Sobic001G416900--Sobic002G209300 Sobic001G416900--Sobic002G403400 Sobic001G416900--Sobic002G056300 Sobic003G300701 Sobic003G300701 Sobic001G416900--Sobic003G300701 Sobic002G056300--Sobic002G059200 Sobic002G056300--Sobic002G403400 Sobic002G056300--Sobic003G350100 Sobic003G067300 Sobic003G067300 Sobic002G056300--Sobic003G067300 Sobic004G265400 Sobic004G265400 Sobic002G056300--Sobic004G265400 Sobic002G056300--Sobic001G416800 Sobic008G133100 Sobic008G133100 Sobic002G056300--Sobic008G133100 Sobic007G149600 Sobic007G149600 Sobic002G056300--Sobic007G149600 Sobic001G200500 Sobic001G200500 Sobic002G056300--Sobic001G200500 Sobic002G059200--Sobic002G403400 Sobic002G059200--Sobic003G350100 Sobic002G059200--Sobic004G265400 Sobic002G059200--Sobic007G149600 Sobic001G193400 Sobic001G193400 Sobic002G059200--Sobic001G193400 Sobic002G059200--Sobic003G067300 Sobic002G059200--Sobic002G056300 Sobic007G221800 Sobic007G221800 Sobic002G059200--Sobic007G221800 Sobic003G067500 Sobic003G067500 Sobic002G059200--Sobic003G067500 Sobic006G278400 Sobic006G278400 Sobic004G227000--Sobic006G278400 Sobic001G180300 Sobic001G180300 Sobic004G227000--Sobic001G180300 Sobic002G425900 Sobic002G425900 Sobic004G227000--Sobic002G425900 Sobic006G187600 Sobic006G187600 Sobic004G227000--Sobic006G187600 Sobic004G227000--Sobic004G128600 Sobic010G224800 Sobic010G224800 Sobic004G227000--Sobic010G224800 Sobic004G227000--Sobic002G059200 Sobic004G329100 Sobic004G329100 Sobic004G227000--Sobic004G329100 Sobic010G114400 Sobic010G114400 Sobic004G227000--Sobic010G114400 Sobic008G061000--Sobic001G200500 Sobic008G061000--Sobic004G329100 Sobic008G061000--Sobic004G128600 Sobic006G197000 Sobic006G197000 Sobic008G061000--Sobic006G197000 Sobic008G061000--Sobic008G133100 Sobic001G541900 Sobic001G541900 Sobic008G061000--Sobic001G541900 Sobic008G061000--Sobic001G193400 Sobic007G001300 Sobic007G001300 Sobic008G061000--Sobic007G001300 Sobic008G061000--Sobic003G350100 Sobic004G128600--Sobic006G197000 Sobic004G128600--Sobic002G425900 Sobic004G128600--Sobic010G224800 Sobic004G128600--Sobic010G114400 Sobic009G154000 Sobic009G154000 Sobic004G128600--Sobic009G154000 Sobic004G128600--Sobic007G001300 Sobic003G201400 Sobic003G201400 Sobic004G128600--Sobic003G201400 Sobic004G128600--Sobic001G200500 Sobic005G102100 Sobic005G102100 Sobic004G128600--Sobic005G102100 Sobic002G403400--Sobic003G350100 Sobic002G403400--Sobic002G059200 Sobic002G403400--Sobic004G265400 Sobic002G403400--Sobic003G067300 Sobic002G403400--Sobic007G149600 Sobic002G403400--Sobic001G193400 Sobic002G403400--Sobic003G067500 Sobic002G403400--Sobic007G221800 Sobic003G200501 Sobic003G200501 Sobic002G403400--Sobic003G200501
Octagon: transcription factors


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